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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0549600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.26 (0.0385) R2 : 0.592
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.94 (0.0986) R2dC : 0.083 R2C : 0.0833
β3 : -2.13 (0.117) R2dE : 0.37 R2E : 0.456
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.482 (0.087) R2dN8 : 0.0466 R2N8 : 0.13
σ : 0.706
deviance : 229.88
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_____
C
peak time of C : 6.16
E
wheather : temperature
threshold : 21.87
memory length : 9093
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
217.84 0.693 5.36 -0.214 0.902 -1.91 0.216 4.35 0.344 6.18 24.7 1512 -- --
226.72 0.701 5.24 0.684 0.946 -1.8 0.27 -- 0.613 6.17 22.69 6460 -- --
217.95 0.688 5.36 -0.203 0.904 -1.92 -- 4.33 0.343 6.2 24.7 1513 -- --
226.59 0.701 5.23 0.698 0.95 -1.77 -- -- 0.617 6.3 22.6 6463 -- --
254.58 0.743 5.38 -0.242 -- -2 -- 4.41 0.325 -- 24.7 1405 -- --
323.23 0.843 5.07 1.71 0.952 -- 0.215 -- 1.36 6 -- -- -- --
323.33 0.842 5.07 1.71 0.953 -- -- -- 1.35 6.06 -- -- -- --
270.79 0.766 5.23 0.761 -- -1.77 -- -- 0.688 -- 22.61 5616 -- --
229.88 0.706 5.26 -- 0.94 -2.13 -- -- 0.482 6.16 21.87 9093 -- --
370.38 0.899 5.09 1.74 -- -- -- -- 1.38 -- -- -- -- --
400.53 0.936 5.11 -- 0.978 -- -- -- 1.16 5.97 -- -- -- --
275.25 0.773 5.28 -- -- -2.17 -- -- 0.511 -- 21.88 8607 -- --
450.14 0.99 5.13 -- -- -- -- -- 1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 216.40 humidity 90 43200 > th dose independent rect. 20 1
2 216.64 radiation 1 43200 < th dose dependent rect. 3 2
5 216.74 humidity 90 43200 < th dose independent rect. 19 2
7 217.30 radiation 1 43200 < th dose dependent rect. 18 11
8 217.68 radiation 1 43200 < th dose independent rect. 18 10
9 217.69 radiation 1 43200 < th dose independent rect. 18 7
10 217.70 radiation 1 43200 < th dose independent rect. 18 2
19 217.89 radiation 1 4320 < th dose dependent rect. 17 11
21 217.93 radiation 1 4320 < th dose dependent rect. 17 8
25 217.96 humidity 90 43200 > th dose independent rect. 20 3
28 218.01 temperature 25 1440 < th dose independent rect. 3 20
29 218.02 radiation 1 4320 < th dose dependent rect. 17 3
34 218.11 humidity 90 43200 > th dose independent rect. 22 1
37 218.30 temperature 25 1440 > th dose independent rect. 3 20
38 218.32 temperature 25 1440 > th dose independent rect. 10 14
40 218.38 temperature 25 4320 < th dose independent rect. 16 2
47 218.47 radiation 1 43200 < th dose dependent rect. 22 7
54 218.63 radiation 20 43200 < th dose independent rect. 6 3
59 218.64 wind 5 43200 > th dose dependent rect. 14 2
63 218.65 radiation 20 43200 < th dose independent rect. 18 15
64 218.65 radiation 1 43200 < th dose dependent rect. 18 2
86 218.85 temperature 25 1440 < th dose independent rect. 10 14
90 218.90 temperature 25 1440 > th dose independent rect. 10 21
95 218.95 temperature 25 1440 > th dose independent sin 18 NA
129 219.21 wind 5 43200 > th dose dependent rect. 10 8
143 219.34 temperature 25 4320 > th dose independent rect. 16 2
145 219.35 temperature 25 1440 < th dose independent rect. 9 22
146 219.36 temperature 25 1440 < th dose independent sin 18 NA
156 219.52 radiation 40 43200 > th dose dependent rect. 10 1
163 219.57 radiation 1 4320 < th dose dependent sin 15 NA
183 219.72 radiation 40 43200 < th dose independent rect. 10 1
248 220.04 temperature 25 1440 > th dose independent rect. 14 8
250 220.06 wind 7 43200 < th dose independent rect. 7 11
255 220.09 wind 7 43200 > th dose independent rect. 5 13
258 220.12 wind 7 43200 < th dose independent rect. 5 13
261 220.15 humidity 90 43200 > th dose dependent rect. 5 1
264 220.18 wind 7 43200 > th dose independent rect. 7 11
283 220.28 temperature 25 1440 < th dose independent rect. 14 8
293 220.33 wind 7 43200 < th dose independent rect. 14 2
299 220.37 radiation 1 43200 > th dose independent rect. 18 1
325 220.45 humidity 90 43200 < th dose independent rect. 22 1
326 220.46 humidity 80 43200 > th dose dependent rect. 18 1
385 220.80 wind 7 43200 < th dose independent sin 23 NA
396 220.86 wind 7 43200 > th dose independent sin 23 NA
400 220.87 temperature 25 1440 < th dose independent no NA NA
409 220.89 radiation 20 43200 < th dose independent sin 10 NA
426 220.91 radiation 1 43200 > th dose dependent rect. 18 1
443 220.92 radiation 10 43200 > th dose dependent rect. 6 1
478 220.99 temperature 25 1440 < th dose independent rect. 14 23
480 221.00 temperature 25 1440 > th dose independent no NA NA
484 221.01 humidity 60 43200 < th dose independent rect. 8 4
489 221.03 humidity 60 43200 > th dose independent rect. 16 1
502 221.08 wind 7 43200 > th dose independent rect. 5 16
513 221.12 radiation 40 43200 > th dose dependent rect. 7 4
544 221.14 humidity 70 43200 > th dose independent rect. 8 1
561 221.18 humidity 60 43200 > th dose independent rect. 15 3
576 221.20 wind 7 43200 > th dose independent rect. 14 2
586 221.20 temperature 20 1440 > th dose dependent rect. 13 17
601 221.23 radiation 1 4320 < th dose dependent rect. 8 22
602 221.24 temperature 25 4320 > th dose independent rect. 15 4
646 221.33 temperature 20 1440 > th dose dependent rect. 14 11
663 221.37 temperature 25 1440 > th dose independent rect. 14 23
683 221.44 humidity 70 43200 < th dose independent rect. 8 1
696 221.48 radiation 1 4320 < th dose dependent rect. 8 20
711 221.51 radiation 1 4320 < th dose dependent rect. 8 17
764 221.58 humidity 60 43200 < th dose independent rect. 16 1
771 221.59 radiation 1 4320 < th dose dependent rect. 8 12
794 221.67 temperature 25 1440 < th dose independent rect. 20 23
808 221.69 humidity 60 43200 > th dose independent rect. 19 1
820 221.70 temperature 25 1440 > th dose independent rect. 20 23
825 221.73 humidity 60 43200 < th dose independent rect. 15 3
847 221.80 temperature 20 1440 > th dose dependent sin 16 NA
876 221.85 humidity 60 43200 > th dose independent rect. 8 4
886 221.86 radiation 40 43200 > th dose dependent sin 10 NA
958 222.09 radiation 40 43200 > th dose independent rect. 10 1