Os09g0549500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os09g0549500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.02 | 0.407 | 6.33 | 0.745 | 0.0433 | -1.09 | 0.519 | 3.67 | 0.102 | 11.9 | 13.83 | 1166 | -- | -- |
| 83.01 | 0.424 | 6.4 | 0.266 | 0.107 | -1.1 | 0.139 | -- | 0.0362 | 11.5 | 11.1 | 8440 | -- | -- |
| 75.81 | 0.406 | 6.34 | 0.74 | 0.0849 | -1.05 | -- | 3.4 | 0.0915 | 13.1 | 14.83 | 1277 | -- | -- |
| 82.77 | 0.424 | 6.4 | 0.269 | 0.125 | -1.11 | -- | -- | 0.0496 | 13.9 | 5.627 | 8415 | -- | -- |
| 76.15 | 0.406 | 6.34 | 0.726 | -- | -1.1 | -- | 3.38 | 0.0971 | -- | 14.7 | 1204 | -- | -- |
| 102.89 | 0.476 | 6.47 | -0.321 | 0.189 | -- | 0.0877 | -- | -0.283 | 13.8 | -- | -- | -- | -- |
| 102.92 | 0.475 | 6.47 | -0.318 | 0.19 | -- | -- | -- | -0.283 | 13.9 | -- | -- | -- | -- |
| 83.88 | 0.427 | 6.4 | 0.275 | -- | -1.13 | -- | -- | 0.0445 | -- | 7.626 | 8366 | -- | -- |
| 84.07 | 0.427 | 6.41 | -- | 0.14 | -0.952 | -- | -- | -0.0249 | 13.7 | 4.598 | 8409 | -- | -- |
| 105.1 | 0.479 | 6.47 | -0.326 | -- | -- | -- | -- | -0.287 | -- | -- | -- | -- | -- |
| 105.59 | 0.481 | 6.46 | -- | 0.196 | -- | -- | -- | -0.247 | 14 | -- | -- | -- | -- |
| 85.24 | 0.43 | 6.41 | -- | -- | -0.973 | -- | -- | -0.0226 | -- | 8 | 8350 | -- | -- |
| 107.9 | 0.485 | 6.47 | -- | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.69 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 3 | 72.79 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 8 | 73.37 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 17 | 73.53 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 24 | 73.73 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 28 | 73.77 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 36 | 73.84 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 47 | 73.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 75 | 74.29 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 95 | 74.49 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 116 | 74.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 11 |
| 162 | 74.95 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 178 | 75.00 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 211 | 75.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 217 | 75.12 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 252 | 75.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 271 | 75.28 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 315 | 75.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 446 | 75.70 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 516 | 75.80 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 603 | 75.89 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 649 | 75.95 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 743 | 76.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 775 | 76.07 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 808 | 76.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 951 | 76.26 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 1 |