Os09g0546200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0546200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 223.29 | 0.702 | 2.93 | -0.253 | 0.253 | -2.79 | -0.00805 | 6.89 | 0.0285 | 8.24 | 47 | 583 | -- | -- |
| 234.92 | 0.719 | 2.9 | -0.214 | 0.219 | 0.105 | 0.207 | -- | 0.000563 | 7.69 | 47 | 583 | -- | -- |
| 223.24 | 0.696 | 2.94 | -0.28 | 0.254 | -2.81 | -- | 6.79 | 0.0272 | 8.25 | 47.07 | 666 | -- | -- |
| 233.05 | 0.711 | 2.89 | -0.252 | 0.282 | -0.268 | -- | -- | 0.0445 | 7.88 | 57.76 | 777 | -- | -- |
| 226.64 | 0.701 | 2.95 | -0.279 | -- | -2.82 | -- | 7.1 | 0.0313 | -- | 47.22 | 763 | -- | -- |
| 234.95 | 0.719 | 2.9 | -0.219 | 0.218 | -- | 0.202 | -- | 0.000997 | 7.63 | -- | -- | -- | -- |
| 235.07 | 0.718 | 2.9 | -0.214 | 0.218 | -- | -- | -- | 0.000816 | 7.71 | -- | -- | -- | -- |
| 235.68 | 0.715 | 2.9 | -0.266 | -- | -0.253 | -- | -- | 0.0472 | -- | 57.06 | 1452 | -- | -- |
| 234.7 | 0.714 | 2.89 | -- | 0.273 | -0.232 | -- | -- | 0.0652 | 7.96 | 57.09 | 776 | -- | -- |
| 237.62 | 0.72 | 2.91 | -0.211 | -- | -- | -- | -- | 0.00397 | -- | -- | -- | -- | -- |
| 236.27 | 0.719 | 2.9 | -- | 0.216 | -- | -- | -- | 0.0246 | 7.78 | -- | -- | -- | -- |
| 237.16 | 0.717 | 2.89 | -- | -- | -0.267 | -- | -- | 0.0934 | -- | 57 | 2962 | -- | -- |
| 238.8 | 0.721 | 2.9 | -- | -- | -- | -- | -- | 0.0274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 22 | 2 |
| 4 | 220.01 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 5 | 220.04 | humidity | 60 | 1440 | > th | dose independent | rect. | 19 | 14 |
| 7 | 220.17 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 8 | 220.42 | humidity | 60 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 10 | 220.43 | humidity | 60 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 11 | 220.46 | humidity | 60 | 720 | < th | dose independent | rect. | 19 | 14 |
| 20 | 220.97 | humidity | 70 | 1440 | < th | dose dependent | rect. | 18 | 14 |
| 23 | 221.02 | humidity | 60 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 43 | 221.17 | humidity | 70 | 1440 | < th | dose dependent | rect. | 19 | 12 |
| 45 | 221.23 | humidity | 60 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 66 | 221.53 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 78 | 221.59 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 16 |
| 80 | 221.63 | humidity | 60 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 82 | 221.72 | humidity | 60 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 88 | 221.77 | humidity | 70 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 107 | 221.91 | humidity | 70 | 270 | < th | dose dependent | rect. | 19 | 12 |
| 202 | 222.85 | humidity | 50 | 4320 | < th | dose dependent | rect. | 13 | 3 |
| 333 | 223.07 | humidity | 70 | 270 | < th | dose independent | rect. | 19 | 1 |
| 570 | 223.28 | humidity | 50 | 720 | < th | dose independent | rect. | 12 | 1 |
| 590 | 223.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 763 | 224.26 | humidity | 50 | 720 | < th | dose dependent | sin | 6 | NA |
| 802 | 224.56 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 1 |
| 817 | 224.56 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 823 | 224.60 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 2 |
| 824 | 224.61 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 934 | 224.65 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 12 | 1 |
| 982 | 225.10 | wind | 7 | 720 | > th | dose independent | rect. | 2 | 7 |
| 987 | 225.15 | temperature | 25 | 90 | > th | dose dependent | rect. | 22 | 8 |