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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0545000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sodium/hydrogen exchanger family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.022) R2 : 0.0123
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.111 (0.0464) R2dN8 : 0.0159 R2N8 : 0.0123
σ : 0.415
deviance : 79.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.78 0.401 3.26 -0.11 0.102 -0.397 -0.149 1.81 0.0884 5.74 1.091 16 -- --
75.35 0.407 3.24 -0.0305 0.125 -0.228 -0.347 -- 0.108 5.24 1.1 16 -- --
72.83 0.397 3.26 -0.112 0.101 -0.399 -- 1.85 0.0889 5.9 1.1 16 -- --
75.63 0.408 3.24 -0.0299 0.127 -0.225 -- -- 0.11 5.87 1.1 16 -- --
73.29 0.399 3.26 -0.118 -- -0.454 -- 1.91 0.0906 -- 1.053 16 -- --
76.98 0.411 3.24 -0.00582 0.191 -- -0.3 -- 0.105 5.1 -- -- -- --
77.21 0.411 3.24 -0.00539 0.19 -- -- -- 0.106 5.29 -- -- -- --
76.37 0.409 3.24 -0.0321 -- -0.274 -- -- 0.113 -- 1 16 -- --
75.65 0.407 3.24 -- 0.127 -0.222 -- -- 0.113 5.87 1.1 16 -- --
79.09 0.416 3.24 0.00117 -- -- -- -- 0.111 -- -- -- -- --
77.21 0.411 3.24 -- 0.19 -- -- -- 0.107 5.29 -- -- -- --
76.39 0.408 3.24 -- -- -0.272 -- -- 0.117 -- 1 16 -- --
79.09 0.415 3.24 -- -- -- -- -- 0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.08 temperature 20.0 30 > th dose dependent rect. 2 1
2 59.14 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 59.19 temperature 20.0 30 > th dose independent rect. 2 1
4 59.20 atmosphere 1005.0 30 > th dose independent rect. 2 1
9 59.29 wind 3.0 30 < th dose dependent rect. 2 1
10 59.31 wind 3.0 30 < th dose independent rect. 2 1
17 59.40 radiation 1.0 43200 < th dose dependent rect. 3 1
18 59.42 humidity 80.0 30 > th dose independent rect. 2 1
20 59.44 temperature 10.0 30 > th dose independent rect. 2 1
22 59.44 temperature 30.0 30 < th dose independent rect. 2 1
23 59.44 humidity 50.0 30 > th dose independent rect. 2 1
27 59.44 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 59.44 radiation 1.0 30 < th dose independent rect. 2 1
34 59.44 precipitation 0.1 30 < th dose independent rect. 2 1
35 59.44 temperature 10.0 30 > th dose independent rect. 3 23
36 59.44 humidity 50.0 30 > th dose dependent rect. 2 1
38 59.44 radiation 1.0 30 < th dose dependent rect. 2 1
43 59.44 precipitation 0.1 30 < th dose dependent rect. 2 1
63 59.80 wind 9.0 1440 < th dose independent rect. 3 1
64 59.80 temperature 10.0 1440 > th dose independent rect. 3 1
67 59.80 temperature 30.0 1440 < th dose independent rect. 3 1
71 59.80 humidity 50.0 1440 > th dose independent rect. 3 1
80 59.80 atmosphere 995.0 1440 > th dose independent rect. 3 1
81 59.80 radiation 1.0 1440 < th dose independent rect. 3 1
101 59.80 temperature 10.0 1440 > th dose independent rect. 4 23
110 59.85 atmosphere 1015.0 30 < th dose dependent rect. 2 1
112 60.07 temperature 30.0 30 < th dose dependent rect. 2 1
113 60.27 wind 1.0 30 > th dose independent rect. 2 1
130 60.92 atmosphere 1000.0 30 > th dose independent rect. 3 23
170 61.67 precipitation 0.1 30 < th dose independent rect. 3 23
171 61.67 precipitation 0.1 30 < th dose dependent rect. 3 23
176 62.49 wind 9.0 30 < th dose independent rect. 3 23
191 64.84 humidity 50.0 30 > th dose independent rect. 3 23
192 65.01 atmosphere 995.0 720 > th dose independent rect. 23 16
195 65.22 temperature 10.0 720 > th dose independent rect. 15 8
196 65.22 temperature 10.0 720 > th dose independent rect. 23 16
198 65.29 precipitation 0.1 720 < th dose independent rect. 15 8
199 65.29 precipitation 0.1 720 < th dose dependent rect. 15 8
200 65.35 humidity 50.0 720 > th dose independent rect. 3 8
201 65.44 temperature 10.0 720 > th dose independent rect. 3 8
202 65.44 atmosphere 995.0 720 > th dose independent rect. 3 8
203 65.44 temperature 10.0 720 > th dose independent rect. 11 16
207 65.66 atmosphere 995.0 720 > th dose independent rect. 15 8
210 65.84 atmosphere 995.0 720 > th dose independent rect. 11 16
213 66.09 wind 9.0 720 < th dose independent rect. 3 8
216 66.48 precipitation 0.1 720 < th dose independent rect. 11 16
217 66.48 precipitation 0.1 720 < th dose dependent rect. 11 16
261 68.21 precipitation 0.1 720 < th dose independent rect. 3 8
262 68.21 precipitation 0.1 720 < th dose dependent rect. 3 8
263 68.24 humidity 90.0 90 < th dose independent rect. 2 1
268 68.42 temperature 30.0 30 < th dose independent rect. 3 23
273 68.69 atmosphere 1015.0 720 < th dose independent rect. 3 8
274 68.71 precipitation 0.1 720 < th dose independent rect. 23 16
275 68.71 precipitation 0.1 720 < th dose dependent rect. 23 16
279 69.04 radiation 40.0 720 < th dose independent rect. 15 8
280 69.08 wind 1.0 10 > th dose independent rect. 23 23
283 69.20 temperature 25.0 270 > th dose independent rect. 22 5
287 69.24 wind 1.0 720 > th dose independent rect. 15 8
293 69.42 wind 9.0 720 < th dose independent rect. 15 8
311 70.16 atmosphere 1015.0 30 < th dose independent rect. 3 23
315 70.19 temperature 25.0 270 > th dose independent rect. 19 8
321 70.30 humidity 50.0 720 > th dose independent rect. 23 16
331 70.50 wind 1.0 10 < th dose independent rect. 11 16
338 70.57 temperature 25.0 270 > th dose dependent rect. 22 5
339 70.57 radiation 10.0 10 < th dose dependent rect. 3 23
345 70.65 wind 1.0 10 < th dose independent rect. 17 10
353 70.67 temperature 25.0 270 > th dose dependent rect. 22 8
363 70.77 wind 9.0 720 < th dose independent rect. 23 16
387 71.04 radiation 10.0 43200 < th dose dependent rect. 23 1
397 71.18 atmosphere 1000.0 30 > th dose independent rect. 23 23
408 71.28 atmosphere 995.0 30 > th dose dependent rect. 3 23
414 71.31 wind 1.0 10 < th dose independent rect. 8 19
483 71.68 temperature 10.0 30 > th dose dependent rect. 3 23
492 71.76 precipitation 0.1 1440 < th dose independent rect. 23 1
493 71.76 precipitation 0.1 1440 < th dose dependent rect. 23 1
497 71.78 atmosphere 995.0 720 > th dose independent rect. 7 8
500 71.79 wind 9.0 1440 < th dose independent rect. 23 1
501 71.79 temperature 10.0 1440 > th dose independent rect. 23 1
504 71.79 temperature 30.0 1440 < th dose independent rect. 23 1
508 71.79 humidity 50.0 1440 > th dose independent rect. 23 1
518 71.79 atmosphere 995.0 1440 > th dose independent rect. 23 1
519 71.79 radiation 1.0 1440 < th dose independent rect. 23 1
540 71.79 temperature 10.0 1440 > th dose independent rect. 24 23
549 71.80 temperature 25.0 30 > th dose independent rect. 22 1
551 71.81 temperature 25.0 30 > th dose dependent rect. 22 1
553 71.82 humidity 80.0 30 > th dose independent rect. 22 1
555 71.82 atmosphere 1005.0 30 > th dose dependent rect. 22 1
559 71.85 wind 3.0 30 < th dose independent rect. 22 1
563 71.85 temperature 30.0 720 < th dose independent rect. 3 8
565 71.86 atmosphere 1005.0 30 > th dose independent rect. 22 1
569 71.87 wind 1.0 30 > th dose independent rect. 22 1
574 71.87 humidity 70.0 30 > th dose dependent rect. 22 1
595 71.88 humidity 50.0 30 > th dose dependent rect. 22 1
604 71.89 humidity 90.0 30 < th dose independent rect. 22 1
606 71.89 precipitation 0.1 30 < th dose independent rect. 22 1
608 71.89 wind 9.0 720 < th dose independent rect. 19 8
609 71.89 wind 5.0 30 < th dose dependent rect. 22 1
612 71.89 precipitation 0.1 30 < th dose dependent rect. 22 1
615 71.90 temperature 10.0 30 > th dose independent rect. 22 1
617 71.90 temperature 30.0 30 < th dose independent rect. 22 1
618 71.90 humidity 50.0 30 > th dose independent rect. 22 1
622 71.90 atmosphere 1010.0 30 < th dose independent rect. 22 1
624 71.90 radiation 1.0 30 < th dose independent rect. 22 1
630 71.90 temperature 10.0 30 > th dose independent rect. 23 23
631 71.90 radiation 1.0 30 < th dose dependent rect. 22 1
641 71.93 wind 9.0 30 < th dose dependent rect. 3 23
642 71.94 precipitation 0.1 720 < th dose independent rect. 19 8
646 71.94 precipitation 0.1 720 < th dose dependent rect. 19 8
652 71.96 atmosphere 1015.0 30 < th dose dependent rect. 22 1
656 71.97 wind 1.0 30 > th dose independent rect. 3 23
658 71.98 temperature 10.0 720 > th dose independent rect. 7 8
659 71.98 atmosphere 1015.0 720 < th dose independent rect. 7 8
661 71.98 temperature 10.0 720 > th dose independent rect. 15 16
665 71.99 wind 1.0 30 > th dose dependent rect. 22 1
670 72.02 humidity 90.0 30 < th dose dependent rect. 22 1
672 72.03 temperature 30.0 30 < th dose dependent rect. 22 1
682 72.08 temperature 10.0 720 > th dose independent rect. 19 8
683 72.08 temperature 30.0 720 < th dose independent rect. 19 8
684 72.08 humidity 50.0 720 > th dose independent rect. 19 8
685 72.08 atmosphere 995.0 720 > th dose independent rect. 19 8
686 72.08 radiation 1.0 720 < th dose independent rect. 19 8
691 72.08 temperature 10.0 720 > th dose independent rect. 3 16
692 72.08 radiation 10.0 720 < th dose dependent rect. 19 8
700 72.10 wind 9.0 720 < th dose independent rect. 11 16
702 72.10 precipitation 0.1 30 < th dose independent rect. 23 23
704 72.10 precipitation 0.1 30 < th dose dependent rect. 23 23
709 72.12 temperature 20.0 30 > th dose dependent rect. 22 5
724 72.20 wind 1.0 10 > th dose independent sin 16 NA
769 72.28 wind 3.0 30 < th dose dependent rect. 22 5
774 72.32 temperature 30.0 720 < th dose independent rect. 15 8
775 72.32 wind 9.0 30 < th dose independent rect. 23 23
805 72.34 precipitation 0.1 720 < th dose independent rect. 15 16
807 72.34 precipitation 0.1 720 < th dose dependent rect. 15 16
809 72.35 temperature 25.0 270 < th dose independent rect. 20 10
830 72.41 atmosphere 995.0 720 > th dose independent rect. 3 16
832 72.41 radiation 10.0 10 < th dose independent rect. 3 23
836 72.45 temperature 25.0 270 > th dose independent sin 12 NA
844 72.47 temperature 20.0 90 > th dose dependent rect. 20 7
848 72.50 precipitation 0.1 720 < th dose independent rect. 7 8
851 72.50 precipitation 0.1 720 < th dose dependent rect. 7 8
853 72.51 temperature 25.0 10 > th dose independent rect. 24 11
856 72.53 atmosphere 995.0 720 > th dose independent rect. 15 16
863 72.54 wind 3.0 30 < th dose dependent rect. 12 15
876 72.58 wind 1.0 10 > th dose independent rect. 23 8
886 72.61 wind 9.0 720 < th dose independent rect. 15 16
894 72.64 humidity 50.0 30 > th dose independent rect. 23 23
904 72.68 humidity 50.0 30 > th dose dependent rect. 3 23
921 72.76 wind 3.0 30 < th dose dependent rect. 15 12
926 72.78 temperature 25.0 720 > th dose dependent rect. 3 6
933 72.81 atmosphere 1015.0 720 < th dose independent rect. 3 16
964 72.89 temperature 25.0 720 > th dose independent rect. 3 6
965 72.89 radiation 40.0 720 < th dose independent rect. 15 16
967 72.90 wind 1.0 10 > th dose independent sin 8 NA
998 73.00 humidity 90.0 90 < th dose independent rect. 1 22