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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0544800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF315 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.36 (0.0298) R2 : 0.578
β1 : -2.07 (0.109) R2dD : 0.345 R2D : 0.371
β2 : 1.8 (0.178) R2dC : 0.582 R2C : -0.807
β3 : 2.26 (0.167) R2dE : 1.03 R2E : -0.365
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0755 (0.0639) R2dN8 : 0.00212 R2N8 : -0.00401
σ : 0.556
deviance : 142.28
__
_____
C
peak time of C : 14.1
E
wheather : radiation
threshold : 0.009937
memory length : 271
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.98
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.92 0.558 4.36 -2.09 1.83 2.28 0.765 0.174 -0.0827 14.1 0.004758 274 8.99 --
141 0.553 4.36 -2.09 1.81 2.29 0.679 -- -0.0899 14 0.009452 271 9 --
142.93 0.557 4.37 -2.13 1.88 2.3 -- 0.0977 -0.106 14.1 0.009923 281 8.99 --
142.28 0.556 4.36 -2.07 1.8 2.26 -- -- -0.0755 14.1 0.009937 271 8.98 --
160.99 0.591 4.33 -2.09 -- 1.34 -- 0.27 -0.0454 -- 0.008275 326 14.6 --
179.45 0.628 4.4 -2.22 0.694 -- -0.403 -- -0.173 22.1 -- -- -- --
180.08 0.628 4.4 -2.21 0.697 -- -- -- -0.171 22 -- -- -- --
159.8 0.589 4.34 -2.04 -- 1.26 -- -- -0.0294 -- 0.00988 324 14.1 --
256.81 0.746 4.36 -- 1.79 2.27 -- -- -0.054 14.1 0.01073 297 9.56 --
209.37 0.676 4.38 -2.2 -- -- -- -- -0.171 -- -- -- -- --
308.25 0.821 4.35 -- 0.689 -- -- -- 0.0742 21.8 -- -- -- --
250.16 0.737 4.36 -- -- 2.17 -- -- 0.0017 -- 0.06 1737 13.9 --
336.62 0.856 4.33 -- -- -- -- -- 0.073 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.52 radiation 1.0 270 < th dose dependent rect. 5 22
2 139.57 radiation 1.0 270 < th dose dependent rect. 11 15
4 139.86 temperature 20.0 270 > th dose independent rect. 19 7
8 140.09 temperature 10.0 270 > th dose dependent rect. 19 7
14 140.92 wind 7.0 270 < th dose independent rect. 7 7
15 140.99 radiation 1.0 270 < th dose independent rect. 11 15
19 141.23 temperature 15.0 270 > th dose independent rect. 6 8
21 141.25 radiation 1.0 270 < th dose independent rect. 5 22
25 141.56 precipitation 0.1 270 < th dose independent rect. 3 15
26 141.56 precipitation 0.1 270 < th dose dependent rect. 3 15
28 141.60 radiation 1.0 270 > th dose independent rect. 14 16
31 141.83 radiation 1.0 270 < th dose dependent rect. 18 9
35 142.07 temperature 30.0 270 < th dose independent rect. 18 9
38 142.14 humidity 60.0 270 > th dose independent rect. 18 9
40 142.27 precipitation 0.1 270 < th dose independent rect. 2 17
41 142.27 precipitation 0.1 270 < th dose dependent rect. 2 17
42 142.31 radiation 1.0 270 < th dose independent rect. 18 9
59 142.70 precipitation 0.1 270 < th dose independent rect. 14 16
60 142.70 precipitation 0.1 270 < th dose dependent rect. 14 16
70 143.08 radiation 1.0 270 < th dose dependent sin 15 NA
79 143.22 temperature 20.0 270 > th dose independent rect. 19 18
84 143.35 temperature 10.0 270 > th dose independent rect. 18 9
89 143.35 temperature 10.0 270 > th dose independent rect. 3 15
90 143.35 atmosphere 1015.0 270 < th dose independent rect. 3 15
91 143.37 wind 9.0 270 < th dose independent rect. 18 9
93 143.41 wind 5.0 270 < th dose independent rect. 1 7
95 143.41 atmosphere 995.0 270 > th dose independent rect. 6 8
96 143.41 atmosphere 1015.0 270 < th dose independent rect. 6 8
97 143.41 temperature 10.0 270 > th dose independent rect. 14 16
100 143.50 precipitation 0.1 270 < th dose independent rect. 6 8
101 143.50 precipitation 0.1 270 < th dose dependent rect. 6 8
102 143.55 radiation 1.0 270 > th dose independent sin 14 NA
106 143.61 wind 9.0 270 < th dose independent rect. 14 16
111 143.66 humidity 50.0 270 > th dose dependent rect. 18 8
114 143.74 atmosphere 995.0 270 > th dose independent rect. 18 9
116 143.80 temperature 10.0 270 > th dose independent rect. 19 7
119 143.80 atmosphere 995.0 270 > th dose independent rect. 19 7
126 143.80 temperature 10.0 270 > th dose independent rect. 2 17
127 143.80 atmosphere 1015.0 270 < th dose independent rect. 2 17
135 143.82 wind 9.0 270 < th dose independent rect. 19 7
144 143.93 precipitation 0.1 270 < th dose independent rect. 18 9
145 143.93 precipitation 0.1 270 < th dose dependent rect. 18 9
153 143.95 precipitation 0.1 270 < th dose independent rect. 19 7
154 143.95 precipitation 0.1 270 < th dose dependent rect. 19 7
155 143.96 temperature 20.0 90 > th dose independent rect. 21 18
156 143.98 radiation 40.0 270 < th dose independent rect. 14 16
190 144.16 wind 9.0 270 < th dose dependent rect. 7 7
197 144.42 radiation 1.0 270 < th dose independent sin 14 NA
204 144.61 wind 5.0 90 < th dose independent rect. 3 6
207 144.66 humidity 50.0 270 > th dose independent rect. 6 8
211 144.71 wind 9.0 270 < th dose independent rect. 2 17
214 144.73 wind 9.0 270 < th dose independent rect. 3 15
217 144.75 temperature 15.0 90 > th dose independent rect. 9 18
221 144.83 temperature 10.0 43200 > th dose independent rect. 10 7
231 144.96 wind 9.0 270 < th dose dependent rect. 1 7
237 145.06 precipitation 0.1 270 < th dose independent rect. 1 7
238 145.06 precipitation 0.1 270 < th dose dependent rect. 1 7
251 145.30 wind 9.0 90 < th dose dependent rect. 3 6
263 145.51 wind 7.0 270 < th dose independent rect. 19 18
273 145.58 wind 1.0 270 > th dose independent rect. 7 7
283 145.87 atmosphere 1015.0 270 < th dose independent rect. 19 7
284 145.88 radiation 1.0 270 > th dose independent rect. 7 7
302 146.14 temperature 10.0 270 > th dose dependent rect. 19 18
313 146.31 precipitation 0.1 90 < th dose independent rect. 3 6
314 146.31 precipitation 0.1 90 < th dose dependent rect. 3 6
317 146.35 wind 3.0 270 < th dose independent rect. 3 3
331 146.54 wind 9.0 90 < th dose independent rect. 9 18
354 146.66 atmosphere 995.0 270 > th dose independent rect. 2 17
362 146.75 atmosphere 995.0 270 > th dose independent rect. 14 16
378 146.91 precipitation 0.1 270 < th dose independent rect. 8 17
379 146.91 precipitation 0.1 270 < th dose dependent rect. 8 17
380 146.94 temperature 10.0 270 > th dose independent rect. 1 7
382 146.94 temperature 30.0 270 < th dose independent rect. 1 7
383 146.94 humidity 50.0 270 > th dose independent rect. 1 7
385 146.94 atmosphere 995.0 270 > th dose independent rect. 1 7
386 146.94 atmosphere 1015.0 270 < th dose independent rect. 1 7
396 147.01 radiation 40.0 270 < th dose independent rect. 1 7
402 147.05 radiation 1.0 270 > th dose independent rect. 14 5
422 147.13 wind 7.0 270 < th dose dependent rect. 3 3
435 147.25 temperature 10.0 90 > th dose independent rect. 3 6
437 147.25 humidity 50.0 90 > th dose independent rect. 3 6
438 147.25 atmosphere 995.0 90 > th dose independent rect. 3 6
439 147.25 atmosphere 1015.0 90 < th dose independent rect. 3 6
445 147.32 temperature 30.0 90 < th dose independent rect. 3 6
450 147.35 humidity 50.0 270 > th dose independent rect. 19 18
465 147.49 humidity 50.0 270 > th dose independent rect. 8 17
470 147.55 wind 1.0 270 > th dose independent rect. 13 6
476 147.61 radiation 30.0 14400 < th dose independent rect. 17 5
479 147.63 wind 9.0 270 < th dose dependent rect. 8 17
492 147.65 wind 1.0 270 > th dose independent rect. 14 16
503 147.66 wind 7.0 270 < th dose independent rect. 13 6
521 147.69 wind 9.0 90 < th dose dependent rect. 20 7
551 147.76 temperature 10.0 270 > th dose independent rect. 13 6
553 147.76 atmosphere 1010.0 270 < th dose independent rect. 13 6
556 147.76 atmosphere 995.0 270 > th dose independent rect. 19 18
565 147.80 radiation 40.0 90 < th dose independent rect. 3 6
599 147.95 precipitation 0.1 270 < th dose independent rect. 3 3
601 147.95 precipitation 0.1 270 < th dose dependent rect. 3 3
627 148.12 precipitation 0.1 270 < th dose independent rect. 13 6
629 148.12 precipitation 0.1 270 < th dose dependent rect. 13 6
630 148.12 wind 9.0 270 < th dose dependent rect. 18 8
691 148.47 radiation 40.0 270 < th dose dependent rect. 1 7
760 148.74 atmosphere 995.0 90 > th dose independent rect. 9 18
774 148.78 temperature 10.0 270 > th dose dependent rect. 14 5
781 148.81 atmosphere 1015.0 270 < th dose independent rect. 19 18
795 148.87 atmosphere 1015.0 270 < th dose independent rect. 8 17
797 148.88 wind 5.0 10 < th dose independent rect. 3 6
850 149.07 temperature 10.0 270 > th dose dependent rect. 7 7
924 149.28 wind 9.0 10 < th dose independent rect. 8 8
928 149.30 precipitation 0.1 270 < th dose independent rect. 19 18
930 149.30 precipitation 0.1 270 < th dose dependent rect. 19 18
942 149.38 temperature 20.0 10 > th dose independent rect. 9 7
971 149.54 radiation 40.0 270 < th dose independent rect. 14 5
998 149.67 wind 9.0 270 < th dose independent rect. 6 21