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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0543900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.029) R2 : 0.00604
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.102 (0.0611) R2dN8 : 0.0078 R2N8 : 0.00604
σ : 0.546
deviance : 137.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.56 0.533 2.86 -0.0498 0.00979 0.464 -0.919 -1.62 0.109 6.1 1015 797 -- --
129.18 0.529 2.87 -0.0871 0.00501 1.2 0.977 -- 0.101 17.9 1015 1319 -- --
130.55 0.532 2.85 -0.0688 0.0202 0.535 -- -1.55 0.136 18.1 1014 960 -- --
131.09 0.533 2.86 -0.0675 0.0101 1.27 -- -- 0.112 5.87 1015 1319 -- --
130.41 0.532 2.86 -0.0423 -- 0.434 -- -1.75 0.118 -- 1014 946 -- --
134.38 0.543 2.87 -0.123 0.00254 -- -0.924 -- 0.0837 6.56 -- -- -- --
136.42 0.547 2.87 -0.138 0.0403 -- -- -- 0.0858 0.581 -- -- -- --
131.1 0.533 2.86 -0.068 -- 1.28 -- -- 0.112 -- 1015 1319 -- --
131.13 0.533 2.87 -- 0.0365 1.35 -- -- 0.118 1.73 1015 1319 -- --
136.52 0.546 2.87 -0.136 -- -- -- -- 0.0865 -- -- -- -- --
136.92 0.547 2.86 -- 0.0382 -- -- -- 0.101 0.406 -- -- -- --
131.22 0.534 2.86 -- -- 1.31 -- -- 0.12 -- 1015 1319 -- --
137.01 0.546 2.86 -- -- -- -- -- 0.102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.82 wind 1.0 90 < th dose dependent rect. 8 1
2 122.44 wind 1.0 90 < th dose independent rect. 8 1
3 124.36 temperature 25.0 90 < th dose dependent rect. 16 1
4 124.64 precipitation 0.1 10 > th dose independent rect. 17 1
32 124.64 precipitation 0.1 10 > th dose dependent rect. 17 1
60 124.66 humidity 90.0 10 > th dose independent rect. 17 1
70 124.66 humidity 90.0 10 > th dose dependent rect. 17 1
106 125.27 temperature 25.0 90 < th dose independent rect. 16 1
115 126.05 atmosphere 1015.0 720 < th dose independent rect. 21 12
117 126.29 temperature 25.0 10 < th dose dependent rect. 11 8
122 126.51 wind 7.0 30 < th dose independent rect. 21 23
125 126.57 atmosphere 1015.0 720 < th dose independent rect. 13 20
131 126.89 atmosphere 1015.0 720 < th dose independent rect. 21 7
132 126.89 atmosphere 1015.0 720 < th dose independent rect. 21 21
134 127.06 atmosphere 1015.0 720 < th dose independent rect. 16 17
140 127.21 atmosphere 1015.0 720 < th dose independent rect. 21 5
143 127.27 radiation 10.0 90 < th dose dependent rect. 8 2
144 127.29 temperature 25.0 270 < th dose independent rect. 14 1
147 127.35 temperature 25.0 270 < th dose independent rect. 14 3
153 127.42 atmosphere 1015.0 720 < th dose independent rect. 21 18
154 127.46 temperature 25.0 270 < th dose dependent rect. 14 3
160 127.59 temperature 25.0 270 < th dose dependent rect. 14 1
177 127.74 wind 7.0 90 < th dose independent rect. 6 13
178 127.74 humidity 80.0 90 > th dose dependent rect. 1 15
195 127.92 humidity 80.0 720 > th dose dependent rect. 9 1
198 127.94 humidity 80.0 90 > th dose dependent rect. 9 2
201 127.99 humidity 90.0 30 > th dose independent rect. 11 8
208 128.04 temperature 15.0 4320 > th dose independent rect. 21 1
210 128.04 wind 7.0 10 < th dose independent rect. 6 13
217 128.06 precipitation 0.1 720 > th dose independent rect. 2 1
218 128.06 precipitation 0.1 720 > th dose dependent rect. 2 1
219 128.06 radiation 10.0 270 < th dose dependent rect. 8 8
220 128.07 wind 9.0 1440 < th dose independent rect. 21 1
221 128.07 atmosphere 1015.0 720 < th dose independent rect. 3 15
226 128.10 temperature 30.0 1440 < th dose independent rect. 21 1
230 128.10 humidity 50.0 1440 > th dose independent rect. 21 1
236 128.10 atmosphere 995.0 1440 > th dose independent rect. 21 1
237 128.10 radiation 1.0 1440 < th dose independent rect. 21 1
257 128.10 temperature 10.0 1440 > th dose independent rect. 22 23
261 128.11 radiation 40.0 43200 < th dose dependent rect. 21 1
265 128.13 temperature 10.0 90 > th dose dependent rect. 6 13
271 128.16 humidity 80.0 30 > th dose dependent sin 2 NA
284 128.18 atmosphere 1015.0 1440 < th dose independent rect. 20 1
286 128.18 temperature 25.0 10 < th dose dependent rect. 16 2
289 128.19 atmosphere 1015.0 1440 > th dose independent rect. 20 1
301 128.22 radiation 10.0 270 < th dose dependent rect. 9 4
302 128.23 atmosphere 1015.0 1440 < th dose independent rect. 19 3
303 128.23 atmosphere 1015.0 720 < th dose independent rect. 12 16
305 128.24 temperature 25.0 30 > th dose independent rect. 20 1
311 128.26 wind 9.0 720 < th dose independent rect. 6 9
323 128.28 humidity 80.0 90 > th dose dependent rect. 1 11
346 128.31 temperature 25.0 720 > th dose independent rect. 6 10
358 128.35 atmosphere 1005.0 30 > th dose dependent rect. 20 1
364 128.37 atmosphere 1015.0 720 < th dose independent sin 10 NA
373 128.39 radiation 10.0 270 < th dose dependent rect. 7 11
378 128.41 temperature 20.0 30 > th dose dependent rect. 20 1
405 128.47 humidity 90.0 30 < th dose independent rect. 20 1
410 128.48 wind 3.0 30 > th dose independent rect. 20 1
432 128.52 atmosphere 1015.0 720 < th dose independent rect. 3 22
442 128.54 humidity 80.0 30 > th dose independent rect. 20 1
443 128.54 atmosphere 1005.0 30 > th dose independent rect. 20 1
450 128.55 atmosphere 1015.0 720 < th dose independent rect. 16 23
453 128.55 temperature 10.0 30 > th dose dependent rect. 21 23
459 128.57 atmosphere 1015.0 720 > th dose independent sin 10 NA
462 128.57 atmosphere 1015.0 720 > th dose independent rect. 21 7
480 128.57 atmosphere 1015.0 720 > th dose dependent sin 13 NA
483 128.57 atmosphere 1015.0 720 > th dose dependent rect. 21 5
484 128.57 atmosphere 1015.0 720 > th dose dependent rect. 20 7
509 128.58 atmosphere 1015.0 720 > th dose independent rect. 24 23
511 128.58 atmosphere 1015.0 720 > th dose dependent no NA NA
512 128.58 humidity 80.0 270 > th dose dependent rect. 9 6
659 128.59 atmosphere 1015.0 720 > th dose dependent rect. 1 22
661 128.60 atmosphere 1015.0 720 > th dose independent no NA NA
662 128.60 atmosphere 1015.0 1440 > th dose independent rect. 23 1
812 128.61 atmosphere 1015.0 720 < th dose independent no NA NA
839 128.62 atmosphere 1015.0 720 > th dose independent sin 0 NA
840 128.62 atmosphere 1015.0 720 < th dose independent sin 0 NA
846 128.62 atmosphere 1015.0 720 > th dose independent rect. 2 20
868 128.63 wind 5.0 30 < th dose independent rect. 20 1
874 128.63 atmosphere 1015.0 720 < th dose independent rect. 5 23
875 128.63 wind 1.0 30 > th dose dependent rect. 20 1
877 128.63 atmosphere 1015.0 720 > th dose dependent rect. 22 3
883 128.64 radiation 10.0 270 > th dose independent rect. 13 22
885 128.64 atmosphere 1015.0 720 > th dose dependent sin 0 NA
890 128.65 atmosphere 1015.0 720 > th dose independent rect. 3 18
900 128.67 wind 9.0 270 > th dose dependent rect. 10 1
904 128.68 temperature 15.0 90 > th dose independent rect. 6 13
906 128.68 wind 7.0 30 < th dose independent rect. 3 23
915 128.69 temperature 10.0 30 > th dose independent rect. 20 1
917 128.69 temperature 30.0 30 < th dose independent rect. 20 1
918 128.69 humidity 50.0 30 > th dose independent rect. 20 1
922 128.69 atmosphere 1010.0 30 < th dose independent rect. 20 1
924 128.69 radiation 1.0 30 < th dose independent rect. 20 1
929 128.69 precipitation 0.1 30 < th dose independent rect. 20 1
933 128.69 temperature 10.0 30 > th dose independent rect. 21 23
934 128.69 radiation 1.0 30 < th dose dependent rect. 20 1
939 128.69 precipitation 0.1 30 < th dose dependent rect. 20 1
945 128.70 radiation 1.0 1440 > th dose independent rect. 8 4
980 128.72 atmosphere 1015.0 720 > th dose dependent rect. 2 20