Os09g0542900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0542900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.71 | 0.445 | 6.99 | -0.856 | 1.2 | 0.966 | 0.194 | -1.76 | 0.183 | 4.99 | 20.69 | 1807 | -- | -- |
| 90.25 | 0.442 | 6.95 | -0.607 | 1.1 | 1.1 | 0.214 | -- | 0.261 | 4.9 | 15.1 | 5705 | -- | -- |
| 89.78 | 0.441 | 6.99 | -0.867 | 1.19 | 0.971 | -- | -1.8 | 0.178 | 4.99 | 20.98 | 1801 | -- | -- |
| 90.36 | 0.443 | 6.95 | -0.602 | 1.1 | 1.1 | -- | -- | 0.264 | 4.89 | 14.9 | 5703 | -- | -- |
| 150.79 | 0.572 | 7.01 | -0.902 | -- | 1.04 | -- | -1.69 | 0.189 | -- | 20.93 | 2698 | -- | -- |
| 113.43 | 0.499 | 6.89 | -0.0358 | 1.13 | -- | 0.237 | -- | 0.522 | 4.81 | -- | -- | -- | -- |
| 113.58 | 0.499 | 6.89 | -0.0368 | 1.14 | -- | -- | -- | 0.52 | 4.8 | -- | -- | -- | -- |
| 152.06 | 0.574 | 6.96 | -0.478 | -- | 1.2 | -- | -- | 0.302 | -- | 9.345 | 2695 | -- | -- |
| 96.13 | 0.457 | 6.92 | -- | 1.09 | 0.683 | -- | -- | 0.4 | 4.89 | 21.58 | 5699 | -- | -- |
| 181.79 | 0.63 | 6.9 | 0.0057 | -- | -- | -- | -- | 0.55 | -- | -- | -- | -- | -- |
| 113.61 | 0.499 | 6.89 | -- | 1.14 | -- | -- | -- | 0.524 | 4.8 | -- | -- | -- | -- |
| 155.96 | 0.582 | 6.93 | -- | -- | 0.82 | -- | -- | 0.392 | -- | 21.2 | 2699 | -- | -- |
| 181.79 | 0.629 | 6.9 | -- | -- | -- | -- | -- | 0.549 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 2 | 86.82 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 21 | 88.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 30 | 88.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 42 | 89.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 66 | 89.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 74 | 89.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 96 | 89.60 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 129 | 89.81 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 138 | 89.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 145 | 89.91 | temperature | 20 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 147 | 89.92 | temperature | 25 | 1440 | > th | dose independent | sin | 15 | NA |
| 157 | 89.97 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 158 | 89.97 | temperature | 15 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 162 | 89.98 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 174 | 90.03 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 192 | 90.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 193 | 90.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 201 | 90.08 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 202 | 90.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 204 | 90.09 | temperature | 25 | 4320 | < th | dose independent | sin | 4 | NA |
| 249 | 90.19 | temperature | 25 | 4320 | > th | dose independent | sin | 4 | NA |
| 265 | 90.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 10 |
| 267 | 90.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 278 | 90.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 13 |
| 279 | 90.23 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 329 | 90.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 17 |
| 338 | 90.29 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 19 |
| 380 | 90.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 13 |
| 435 | 90.37 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 17 |
| 436 | 90.37 | temperature | 15 | 14400 | > th | dose dependent | sin | 17 | NA |
| 448 | 90.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 485 | 90.39 | temperature | 15 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 533 | 90.41 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 556 | 90.42 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 577 | 90.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 15 |
| 624 | 90.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 680 | 90.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 707 | 90.48 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 802 | 90.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 829 | 90.51 | temperature | 15 | 14400 | > th | dose dependent | rect. | 4 | 18 |
| 842 | 90.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 943 | 90.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 953 | 90.54 | temperature | 30 | 14400 | < th | dose dependent | sin | 15 | NA |
| 978 | 90.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 985 | 90.55 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |