FiT-DB / Search/ Help/ Sample detail

Os09g0542800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.58 (0.029) R2 : 0.771
β1 : 1.04 (0.106) R2dD : 0.0498 R2D : 0.0413
β2 : 2.87 (0.0757) R2dC : 0.724 R2C : 0.716
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.104 (0.062) R2dN8 : 0.0019 R2N8 : 0.004
σ : 0.546
deviance : 136.04
__
_____
C
peak time of C : 17.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.43 0.507 9.6 1.02 2.67 1.15 0.936 0.723 -0.165 18.3 7.454 128 -- --
117.3 0.504 9.6 1.04 2.68 1.11 0.941 -- -0.164 18.3 4.577 126 -- --
118.57 0.507 9.6 1.01 2.68 1.12 -- 0.755 -0.161 18.2 7.879 127 -- --
118.74 0.508 9.6 1.01 2.59 1.13 -- -- -0.164 18.4 1.479 171 -- --
213.17 0.68 9.6 0.82 -- 3.13 -- 0.232 -0.426 -- -25.24 645 -- --
134.21 0.543 9.58 1.04 2.86 -- 0.862 -- -0.108 17.5 -- -- -- --
136.04 0.546 9.58 1.04 2.87 -- -- -- -0.104 17.5 -- -- -- --
213.36 0.68 9.6 0.807 -- 3.15 -- -- -0.448 -- -35.68 645 -- --
145.22 0.561 9.63 -- 2.47 1.22 -- -- -0.301 18.5 -0.0002088 218 -- --
564.34 1.11 9.54 0.945 -- -- -- -- -0.174 -- -- -- -- --
164.53 0.6 9.61 -- 2.85 -- -- -- -0.22 17.5 -- -- -- --
230.51 0.707 9.62 -- -- 3.17 -- -- -0.54 -- -30.31 647 -- --
587.88 1.13 9.56 -- -- -- -- -- -0.279 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.28 radiation 40.0 270 < th dose dependent rect. 3 14
5 109.45 humidity 70.0 90 > th dose independent rect. 5 15
6 109.51 humidity 70.0 90 > th dose independent rect. 5 17
10 109.96 humidity 50.0 270 > th dose dependent rect. 3 16
13 110.10 humidity 70.0 270 > th dose independent rect. 3 16
15 110.14 humidity 60.0 90 > th dose dependent rect. 5 16
16 110.31 temperature 30.0 270 < th dose independent rect. 3 16
27 110.67 humidity 60.0 10 > th dose dependent rect. 6 14
28 110.68 radiation 20.0 270 < th dose independent rect. 3 14
34 110.87 radiation 40.0 270 < th dose dependent rect. 10 22
35 110.89 humidity 60.0 10 > th dose dependent rect. 6 16
38 111.06 radiation 40.0 270 < th dose independent rect. 3 13
46 111.26 radiation 40.0 270 < th dose independent rect. 10 22
58 111.55 radiation 30.0 270 < th dose dependent rect. 3 8
68 111.82 radiation 40.0 90 < th dose independent rect. 5 17
82 112.06 radiation 20.0 270 < th dose dependent rect. 15 17
83 112.06 radiation 30.0 270 < th dose dependent rect. 13 19
124 112.62 radiation 20.0 270 < th dose independent rect. 11 21
137 112.72 radiation 1.0 90 > th dose dependent rect. 8 11
159 112.91 radiation 40.0 90 < th dose dependent rect. 5 17
172 113.00 humidity 60.0 90 > th dose dependent sin 0 NA
175 113.05 temperature 30.0 90 < th dose independent rect. 17 15
176 113.06 radiation 40.0 270 < th dose dependent sin 4 NA
186 113.19 temperature 30.0 90 < th dose independent rect. 5 17
189 113.22 radiation 20.0 270 < th dose independent rect. 13 19
207 113.36 temperature 30.0 90 < th dose independent rect. 5 14
211 113.37 precipitation 0.1 90 < th dose independent rect. 8 21
212 113.37 precipitation 0.1 90 < th dose dependent rect. 8 21
220 113.42 humidity 70.0 90 > th dose independent rect. 13 22
229 113.49 humidity 90.0 10 < th dose dependent rect. 9 12
238 113.65 radiation 10.0 270 < th dose independent rect. 3 5
241 113.66 temperature 30.0 90 < th dose independent rect. 15 17
287 113.93 humidity 90.0 10 < th dose independent rect. 3 6
296 114.00 humidity 60.0 10 > th dose dependent sin 23 NA
315 114.12 radiation 40.0 10 < th dose independent rect. 6 17
319 114.14 humidity 90.0 90 < th dose dependent rect. 8 7
320 114.14 temperature 10.0 90 > th dose dependent rect. 8 21
323 114.15 humidity 70.0 90 > th dose independent rect. 13 19
326 114.16 temperature 10.0 90 > th dose dependent rect. 8 9
327 114.17 humidity 90.0 90 < th dose independent rect. 3 5
330 114.18 radiation 1.0 270 > th dose dependent rect. 15 22
331 114.19 humidity 70.0 90 > th dose independent rect. 15 17
353 114.30 humidity 70.0 90 > th dose independent sin 1 NA
354 114.30 radiation 1.0 270 > th dose dependent sin 5 NA
379 114.40 radiation 20.0 270 < th dose independent rect. 2 8
411 114.55 wind 5.0 90 < th dose independent rect. 5 3
425 114.59 humidity 90.0 720 < th dose dependent rect. 9 1
431 114.61 wind 9.0 90 < th dose independent rect. 8 21
434 114.62 humidity 60.0 90 > th dose independent rect. 17 15
448 114.67 temperature 30.0 270 < th dose independent rect. 11 21
462 114.71 humidity 90.0 90 < th dose dependent rect. 8 9
490 114.88 radiation 40.0 270 < th dose independent rect. 2 20
491 114.88 radiation 40.0 10 < th dose dependent rect. 6 17
512 114.95 humidity 70.0 90 > th dose independent rect. 15 20
516 114.97 wind 1.0 90 > th dose independent rect. 5 3
517 114.97 temperature 30.0 270 < th dose independent rect. 13 19
518 114.97 humidity 90.0 10 < th dose dependent rect. 9 17
546 115.07 temperature 10.0 90 > th dose independent rect. 5 3
548 115.07 temperature 30.0 90 < th dose independent rect. 5 3
549 115.07 humidity 50.0 90 > th dose independent rect. 5 3
551 115.07 atmosphere 995.0 90 > th dose independent rect. 5 3
552 115.07 atmosphere 1015.0 90 < th dose independent rect. 5 3
553 115.07 temperature 10.0 90 > th dose independent rect. 8 21
573 115.11 precipitation 0.1 90 < th dose independent rect. 5 3
575 115.11 precipitation 0.1 90 < th dose dependent rect. 5 3
587 115.15 humidity 90.0 10 < th dose dependent rect. 9 9
598 115.22 radiation 40.0 90 < th dose independent rect. 5 3
599 115.22 radiation 1.0 90 > th dose independent rect. 8 11
617 115.26 radiation 30.0 90 < th dose independent rect. 5 6
619 115.26 humidity 90.0 10 < th dose dependent rect. 9 6
624 115.28 radiation 40.0 90 < th dose dependent rect. 5 6
637 115.31 temperature 10.0 10 > th dose dependent rect. 9 20
638 115.32 radiation 40.0 90 < th dose dependent rect. 5 10
650 115.38 humidity 50.0 270 > th dose independent rect. 15 16
665 115.42 humidity 70.0 90 > th dose independent rect. 5 6
761 115.72 humidity 80.0 10 < th dose independent rect. 9 6
786 115.78 radiation 40.0 270 > th dose independent rect. 9 1
790 115.79 radiation 40.0 270 < th dose independent rect. 11 11
791 115.79 humidity 70.0 90 > th dose independent rect. 23 23
792 115.79 temperature 10.0 90 > th dose dependent rect. 8 7
801 115.81 temperature 30.0 90 < th dose dependent rect. 5 16
803 115.82 precipitation 0.1 270 < th dose independent rect. 6 22
807 115.82 precipitation 0.1 270 < th dose dependent rect. 6 22
811 115.84 temperature 15.0 90 > th dose independent rect. 17 15
844 115.92 wind 5.0 270 < th dose independent rect. 3 4
871 115.97 humidity 70.0 90 < th dose independent sin 1 NA
876 115.98 radiation 10.0 270 > th dose independent rect. 16 22
928 116.10 humidity 80.0 720 < th dose independent rect. 8 2
929 116.10 humidity 80.0 90 < th dose independent rect. 8 9
933 116.11 wind 9.0 90 < th dose dependent rect. 5 3
949 116.17 radiation 20.0 270 < th dose independent sin 5 NA
951 116.17 temperature 10.0 90 > th dose dependent rect. 5 3
952 116.17 atmosphere 995.0 90 > th dose dependent rect. 5 3
954 116.18 radiation 40.0 270 > th dose independent sin 11 NA
962 116.19 radiation 40.0 270 > th dose independent rect. 14 21
971 116.22 humidity 70.0 90 < th dose independent rect. 8 12
1000 116.27 radiation 40.0 90 < th dose dependent rect. 5 4