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Os09g0542500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF632 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0154) R2 : 0.784
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.595 (0.0396) R2dC : 0.12 R2C : 0.0984
β3 : 1.52 (0.0438) R2dE : 0.648 R2E : 0.663
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.082 (0.0342) R2dN8 : 0.00347 R2N8 : 0.035
σ : 0.284
deviance : 37.06
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_____
C
peak time of C : 17.8
E
wheather : temperature
threshold : 20.7
memory length : 23178
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.86 0.273 11.2 0.32 0.606 1.04 0.746 -2.27 0.121 17.6 25.8 8079 -- --
37.24 0.284 11.2 1.06 0.593 1 0.616 -- 0.245 17.5 26.7 9420 -- --
35.2 0.276 11.2 0.31 0.605 1.04 -- -2.29 0.117 17.6 25.91 8043 -- --
38.36 0.288 11.1 1.08 0.595 0.949 -- -- 0.284 17.8 26.7 9167 -- --
51.31 0.334 11.2 0.407 -- 1.05 -- -2.05 0.0983 -- 26.8 7761 -- --
69.97 0.392 11.1 1.54 0.612 -- 0.651 -- 0.68 18 -- -- -- --
71.01 0.395 11 1.53 0.616 -- -- -- 0.682 18.1 -- -- -- --
56.16 0.349 11.1 1.05 -- 0.967 -- -- 0.248 -- 26.8 9223 -- --
37.06 0.284 11.2 -- 0.595 1.52 -- -- 0.082 17.8 20.7 23178 -- --
90.65 0.445 11 1.52 -- -- -- -- 0.668 -- -- -- -- --
133.1 0.54 11.1 -- 0.594 -- -- -- 0.511 18.2 -- -- -- --
57.2 0.352 11.2 -- -- 1.49 -- -- 0.0692 -- 20.6 23546 -- --
151.38 0.574 11.1 -- -- -- -- -- 0.5 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.05 radiation 1 14400 < th dose dependent rect. 4 1
6 34.94 wind 7 43200 > th dose dependent rect. 10 5
8 35.75 wind 1 43200 < th dose dependent rect. 19 10
9 35.80 wind 1 43200 < th dose dependent rect. 21 8
10 35.82 wind 1 43200 < th dose dependent rect. 23 5
11 35.84 radiation 1 14400 < th dose dependent rect. 22 7
15 35.92 radiation 10 43200 < th dose independent rect. 6 1
16 35.92 wind 7 43200 > th dose independent rect. 9 6
20 35.93 wind 7 43200 < th dose independent rect. 9 6
21 35.95 temperature 25 14400 > th dose independent rect. 11 1
29 36.08 wind 7 43200 < th dose independent rect. 10 4
33 36.14 wind 7 43200 > th dose independent rect. 10 4
41 36.27 radiation 10 43200 < th dose independent rect. 2 5
43 36.27 radiation 10 43200 < th dose independent rect. 19 12
56 36.39 temperature 25 14400 < th dose independent rect. 10 2
62 36.50 radiation 10 43200 < th dose independent rect. 17 15
63 36.52 wind 7 43200 > th dose independent rect. 5 10
66 36.56 radiation 1 43200 > th dose independent rect. 18 1
75 36.56 wind 7 43200 < th dose independent rect. 5 10
86 36.68 temperature 20 43200 < th dose independent rect. 1 1
95 36.80 temperature 20 43200 < th dose independent rect. 5 1
104 36.88 temperature 20 43200 > th dose independent rect. 1 1
107 36.94 temperature 20 43200 > th dose independent rect. 5 1
118 36.99 radiation 10 43200 < th dose independent rect. 17 1
119 37.00 humidity 90 43200 > th dose independent rect. 22 2
122 37.03 humidity 90 43200 > th dose independent rect. 18 1
123 37.03 humidity 90 43200 > th dose dependent rect. 22 2
133 37.08 temperature 20 43200 < th dose dependent rect. 22 1
137 37.10 temperature 20 43200 < th dose independent rect. 21 1
151 37.15 temperature 20 43200 > th dose independent rect. 21 1
166 37.18 humidity 90 43200 > th dose dependent rect. 14 11
171 37.19 humidity 90 43200 > th dose dependent rect. 13 13
172 37.19 humidity 90 43200 > th dose dependent rect. 12 15
181 37.20 humidity 90 43200 > th dose dependent rect. 16 9
202 37.23 wind 3 43200 > th dose dependent rect. 11 1
237 37.29 humidity 90 43200 > th dose dependent sin 16 NA
253 37.33 temperature 25 14400 > th dose independent rect. 4 9
260 37.34 humidity 90 43200 > th dose dependent rect. 21 4
273 37.37 radiation 1 43200 < th dose dependent rect. 18 1
275 37.38 temperature 25 43200 < th dose independent rect. 17 1
280 37.38 temperature 25 4320 > th dose dependent rect. 17 2
299 37.41 humidity 90 43200 > th dose independent rect. 16 8
304 37.42 humidity 90 43200 > th dose independent rect. 14 10
313 37.44 temperature 25 43200 > th dose independent rect. 17 1
320 37.45 humidity 90 43200 < th dose independent rect. 18 1
355 37.51 temperature 25 14400 < th dose independent rect. 4 9
365 37.52 radiation 1 43200 > th dose dependent rect. 5 1
387 37.57 wind 7 43200 < th dose independent rect. 11 1
391 37.57 temperature 25 14400 < th dose independent rect. 2 11
392 37.57 wind 1 43200 < th dose dependent sin 13 NA
488 37.71 radiation 10 43200 < th dose independent rect. 17 5
490 37.71 radiation 10 43200 < th dose independent rect. 17 7
494 37.71 radiation 10 43200 < th dose independent rect. 17 11
499 37.71 temperature 20 14400 > th dose dependent rect. 22 1
529 37.75 humidity 80 43200 > th dose independent rect. 11 2
610 37.82 temperature 25 4320 > th dose dependent rect. 16 20
612 37.83 wind 7 43200 > th dose independent rect. 11 1
622 37.84 humidity 90 43200 > th dose independent sin 17 NA
687 37.90 temperature 25 4320 > th dose dependent rect. 8 14
694 37.91 temperature 25 14400 > th dose independent sin 4 NA
753 37.96 radiation 1 43200 < th dose dependent rect. 6 8
791 37.99 humidity 90 43200 > th dose independent rect. 12 15
792 37.99 wind 9 43200 < th dose dependent rect. 11 1
834 38.03 temperature 20 43200 < th dose independent sin 10 NA
863 38.05 temperature 25 14400 < th dose independent sin 3 NA
897 38.08 temperature 20 43200 > th dose independent sin 10 NA
900 38.08 radiation 1 43200 > th dose independent rect. 8 5
908 38.08 wind 1 43200 < th dose dependent rect. 13 16
912 38.08 humidity 90 43200 > th dose dependent rect. 21 22
916 38.09 radiation 1 43200 > th dose independent rect. 9 3
918 38.09 radiation 1 43200 < th dose independent rect. 8 5
926 38.09 radiation 1 43200 < th dose dependent rect. 6 3
952 38.11 temperature 25 14400 > th dose dependent rect. 12 1
957 38.12 radiation 1 43200 < th dose independent rect. 9 3
961 38.12 humidity 90 43200 > th dose independent rect. 10 18
962 38.12 humidity 90 43200 > th dose dependent no NA NA
970 38.12 humidity 90 43200 > th dose dependent rect. 2 23