Os09g0541700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0541700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.36 | 0.386 | 12.2 | -0.513 | 1.53 | -2.03 | -0.793 | -2.9 | -0.266 | 22 | 30.95 | 347 | -- | -- |
| 75.23 | 0.404 | 12.3 | -0.951 | 1.47 | -2.05 | -0.625 | -- | -0.34 | 21.8 | 32 | 379 | -- | -- |
| 69.61 | 0.389 | 12.2 | -0.458 | 1.57 | -2 | -- | -2.97 | -0.243 | 22 | 31 | 317 | -- | -- |
| 77.01 | 0.409 | 12.3 | -0.957 | 1.5 | -2.02 | -- | -- | -0.354 | 21.8 | 31.8 | 374 | -- | -- |
| 166.53 | 0.601 | 12.2 | -0.928 | -- | -3.06 | -- | -1.77 | -0.416 | -- | 63.17 | 626 | -- | -- |
| 126.54 | 0.527 | 12.2 | -0.507 | 1.83 | -- | -0.335 | -- | -0.0248 | 20.7 | -- | -- | -- | -- |
| 126.9 | 0.528 | 12.2 | -0.496 | 1.83 | -- | -- | -- | -0.0244 | 20.7 | -- | -- | -- | -- |
| 168.91 | 0.605 | 12.3 | -1.24 | -- | -3.1 | -- | -- | -0.499 | -- | 77.72 | 628 | -- | -- |
| 99.25 | 0.464 | 12.2 | -- | 1.56 | -1.62 | -- | -- | -0.195 | 21.5 | 32.21 | 369 | -- | -- |
| 317.48 | 0.833 | 12.2 | -0.499 | -- | -- | -- | -- | -0.0394 | -- | -- | -- | -- | -- |
| 133.39 | 0.54 | 12.2 | -- | 1.84 | -- | -- | -- | 0.0308 | 20.7 | -- | -- | -- | -- |
| 205.63 | 0.668 | 12.2 | -- | -- | -2.64 | -- | -- | -0.305 | -- | 78.88 | 612 | -- | -- |
| 324.06 | 0.84 | 12.1 | -- | -- | -- | -- | -- | 0.016 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 3 | 65.32 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 34 | 67.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 38 | 67.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 41 | 67.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 42 | 67.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 54 | 68.41 | temperature | 15 | 270 | > th | dose dependent | sin | 2 | NA |
| 57 | 68.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 68 | 68.75 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 84 | 69.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 111 | 69.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 117 | 69.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 131 | 70.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 153 | 70.55 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 156 | 70.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 159 | 70.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 190 | 71.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 193 | 71.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 215 | 71.62 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 232 | 71.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 244 | 72.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 430 | 74.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 442 | 74.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 447 | 74.51 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 736 | 77.14 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 910 | 78.28 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 941 | 78.60 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 942 | 78.60 | temperature | 25 | 720 | > th | dose independent | sin | 4 | NA |