Os09g0540000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0540000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.11 | 0.465 | 9.39 | 0.317 | 1.53 | 0.438 | 0.26 | 3.57 | -0.00455 | 22 | 6.433 | 1098 | -- | -- |
| 101.87 | 0.47 | 9.49 | -0.424 | 1.49 | 0.578 | 0.732 | -- | -0.201 | 22 | 24.1 | 1101 | -- | -- |
| 98.22 | 0.462 | 9.39 | 0.32 | 1.52 | 0.458 | -- | 3.72 | -0.00658 | 22 | 6.13 | 1021 | -- | -- |
| 103.26 | 0.473 | 9.48 | -0.459 | 1.48 | 0.603 | -- | -- | -0.207 | 21.9 | 24.07 | 1090 | -- | -- |
| 204.72 | 0.666 | 9.42 | -0.512 | -- | 1.38 | -- | 1.14 | -0.164 | -- | 24.13 | 857 | -- | -- |
| 111.57 | 0.495 | 9.46 | -0.267 | 1.6 | -- | 0.743 | -- | -0.118 | 22.2 | -- | -- | -- | -- |
| 113.73 | 0.499 | 9.46 | -0.295 | 1.59 | -- | -- | -- | -0.119 | 22.1 | -- | -- | -- | -- |
| 202.63 | 0.663 | 9.47 | -0.69 | -- | 1.51 | -- | -- | -0.302 | -- | 24 | 843 | -- | -- |
| 108.66 | 0.485 | 9.47 | -- | 1.49 | 0.488 | -- | -- | -0.145 | 21.9 | 24.04 | 1078 | -- | -- |
| 267.25 | 0.764 | 9.42 | -0.274 | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
| 116.03 | 0.504 | 9.46 | -- | 1.59 | -- | -- | -- | -0.0866 | 22.1 | -- | -- | -- | -- |
| 213.1 | 0.68 | 9.44 | -- | -- | 1.36 | -- | -- | -0.205 | -- | 24.1 | 836 | -- | -- |
| 269.23 | 0.766 | 9.42 | -- | -- | -- | -- | -- | -0.0869 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 8 | 88.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 5 |
| 31 | 90.66 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 13 |
| 33 | 90.85 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 8 |
| 36 | 91.06 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 13 |
| 51 | 91.51 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 66 | 91.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 84 | 92.14 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 4 |
| 106 | 92.42 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 137 | 92.69 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 6 |
| 164 | 93.11 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 1 |
| 176 | 93.25 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 183 | 93.35 | temperature | 25 | 720 | > th | dose independent | sin | 14 | NA |
| 186 | 93.36 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 194 | 93.40 | temperature | 20 | 30 | > th | dose independent | rect. | 2 | 3 |
| 207 | 93.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 208 | 93.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 14 |
| 236 | 93.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 255 | 93.95 | humidity | 70 | 43200 | > th | dose dependent | sin | 15 | NA |
| 259 | 94.00 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 18 |
| 262 | 94.03 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 23 |
| 265 | 94.06 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 18 |
| 285 | 94.26 | radiation | 20 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 299 | 94.36 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 21 |
| 315 | 94.51 | wind | 3 | 90 | < th | dose independent | rect. | 23 | 6 |
| 341 | 94.61 | temperature | 15 | 720 | > th | dose dependent | sin | 15 | NA |
| 350 | 94.67 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 372 | 94.78 | radiation | 20 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 375 | 94.79 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 6 |
| 383 | 94.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 409 | 94.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 415 | 94.95 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 424 | 95.01 | radiation | 1 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 440 | 95.08 | radiation | 1 | 30 | < th | dose dependent | sin | 4 | NA |
| 457 | 95.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 475 | 95.24 | wind | 7 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 499 | 95.33 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 502 | 95.33 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 512 | 95.37 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 16 |
| 520 | 95.42 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 522 | 95.44 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 14 |
| 538 | 95.50 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 16 |
| 539 | 95.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 543 | 95.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 559 | 95.55 | wind | 3 | 270 | < th | dose independent | rect. | 23 | 4 |
| 585 | 95.63 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 14 |
| 615 | 95.72 | radiation | 1 | 10 | < th | dose independent | sin | 4 | NA |
| 618 | 95.72 | wind | 9 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 622 | 95.74 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 662 | 95.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 720 | 96.07 | radiation | 40 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 748 | 96.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 760 | 96.18 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 21 |
| 785 | 96.24 | wind | 9 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 817 | 96.31 | wind | 5 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 824 | 96.32 | temperature | 15 | 90 | > th | dose independent | rect. | 5 | 18 |
| 828 | 96.33 | temperature | 30 | 30 | < th | dose independent | rect. | 5 | 6 |
| 888 | 96.47 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 895 | 96.48 | radiation | 1 | 10 | > th | dose independent | sin | 3 | NA |
| 912 | 96.52 | radiation | 40 | 30 | < th | dose independent | rect. | 11 | 18 |
| 948 | 96.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 951 | 96.61 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 21 |
| 956 | 96.62 | humidity | 70 | 43200 | > th | dose dependent | no | NA | NA |
| 987 | 96.71 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 6 |
| 1000 | 96.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |