FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0539700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0165) R2 : 0.0112
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0793 (0.0348) R2dN8 : 0.0145 R2N8 : 0.0112
σ : 0.311
deviance : 44.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.14 0.305 3.04 -0.055 0.0904 -0.235 -0.168 0.789 0.0685 5.76 1.058 16 -- --
42.48 0.306 3.03 -0.0197 0.0995 -0.164 -0.25 -- 0.0776 5.59 1.058 16 -- --
42.21 0.303 3.04 -0.0573 0.0898 -0.235 -- 0.83 0.0687 5.67 1.06 16 -- --
42.63 0.306 3.03 -0.0204 0.0991 -0.161 -- -- 0.0787 5.75 1.058 16 -- --
42.57 0.304 3.05 -0.0663 -- -0.282 -- 0.866 0.063 -- 1.1 16 -- --
43.33 0.309 3.03 -0.00262 0.146 -- -0.213 -- 0.0749 5.26 -- -- -- --
43.44 0.309 3.03 -0.00283 0.145 -- -- -- 0.0759 5.24 -- -- -- --
43.09 0.307 3.04 -0.0221 -- -0.2 -- -- 0.0814 -- 1.1 16 -- --
42.64 0.306 3.03 -- 0.0993 -0.159 -- -- 0.0809 5.75 1.029 16 -- --
44.54 0.312 3.04 0.00221 -- -- -- -- 0.0796 -- -- -- -- --
43.44 0.308 3.03 -- 0.145 -- -- -- 0.0762 5.24 -- -- -- --
43.1 0.307 3.04 -- -- -0.198 -- -- 0.0838 -- 1.1 16 -- --
44.54 0.311 3.04 -- -- -- -- -- 0.0793 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.07 wind 1.0 30 < th dose independent rect. 2 1
3 38.11 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 38.12 wind 3.0 30 < th dose dependent rect. 2 1
10 38.16 temperature 10.0 30 > th dose dependent rect. 2 1
17 38.17 temperature 10.0 30 > th dose independent rect. 2 1
19 38.17 temperature 25.0 30 < th dose independent rect. 2 1
21 38.17 humidity 50.0 30 > th dose independent rect. 2 1
25 38.17 atmosphere 995.0 30 > th dose independent rect. 2 1
26 38.17 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 38.17 radiation 1.0 30 < th dose independent rect. 2 1
33 38.17 precipitation 0.1 30 < th dose independent rect. 2 1
34 38.17 temperature 10.0 30 > th dose independent rect. 3 23
36 38.17 humidity 50.0 30 > th dose dependent rect. 2 1
42 38.17 radiation 1.0 30 < th dose dependent rect. 2 1
47 38.17 precipitation 0.1 30 < th dose dependent rect. 2 1
48 38.18 atmosphere 1005.0 30 > th dose independent rect. 2 1
51 38.20 atmosphere 1015.0 30 < th dose dependent rect. 2 1
53 38.21 wind 9.0 30 < th dose independent rect. 3 23
54 38.21 temperature 30.0 30 < th dose dependent rect. 2 1
68 38.40 wind 1.0 30 > th dose independent rect. 2 1
108 38.91 atmosphere 995.0 30 > th dose independent rect. 3 23
114 39.07 precipitation 0.1 30 < th dose independent rect. 3 23
115 39.07 precipitation 0.1 30 < th dose dependent rect. 3 23
128 39.51 radiation 1.0 43200 < th dose dependent rect. 3 1
130 39.57 wind 9.0 1440 < th dose independent rect. 3 1
131 39.57 temperature 10.0 1440 > th dose independent rect. 3 1
134 39.57 temperature 30.0 1440 < th dose independent rect. 3 1
138 39.57 humidity 50.0 1440 > th dose independent rect. 3 1
147 39.57 atmosphere 995.0 1440 > th dose independent rect. 3 1
148 39.57 radiation 1.0 1440 < th dose independent rect. 3 1
168 39.57 temperature 10.0 1440 > th dose independent rect. 4 23
171 39.57 radiation 1.0 1440 < th dose dependent rect. 3 1
195 39.71 humidity 50.0 30 > th dose independent rect. 3 23
204 39.95 temperature 10.0 720 > th dose independent rect. 15 8
205 39.95 temperature 10.0 720 > th dose independent rect. 23 16
210 40.08 temperature 10.0 720 > th dose independent rect. 3 8
211 40.08 atmosphere 995.0 720 > th dose independent rect. 3 8
212 40.08 temperature 10.0 720 > th dose independent rect. 11 16
213 40.09 humidity 90.0 90 < th dose independent rect. 2 1
216 40.23 atmosphere 995.0 720 > th dose independent rect. 23 16
241 40.25 wind 9.0 720 < th dose independent rect. 3 8
244 40.27 precipitation 0.1 720 < th dose independent rect. 15 8
246 40.27 precipitation 0.1 720 < th dose dependent rect. 15 8
247 40.28 radiation 40.0 720 < th dose independent rect. 15 8
253 40.40 humidity 50.0 720 > th dose independent rect. 3 8
258 40.49 atmosphere 1015.0 720 < th dose independent rect. 3 8
266 40.59 precipitation 0.1 720 < th dose independent rect. 11 16
268 40.59 precipitation 0.1 720 < th dose dependent rect. 11 16
277 40.70 wind 1.0 720 > th dose independent rect. 15 8
278 40.71 wind 9.0 1440 < th dose independent rect. 23 1
279 40.71 temperature 10.0 1440 > th dose independent rect. 23 1
282 40.71 temperature 30.0 1440 < th dose independent rect. 23 1
286 40.71 humidity 50.0 1440 > th dose independent rect. 23 1
296 40.71 atmosphere 995.0 1440 > th dose independent rect. 23 1
297 40.71 radiation 1.0 1440 < th dose independent rect. 23 1
317 40.71 temperature 10.0 1440 > th dose independent rect. 24 23
321 40.71 radiation 1.0 1440 < th dose dependent rect. 23 1
326 40.72 temperature 25.0 30 > th dose independent rect. 22 1
327 40.72 humidity 90.0 30 < th dose independent rect. 22 1
329 40.73 temperature 25.0 30 > th dose dependent rect. 22 1
331 40.75 humidity 90.0 30 < th dose dependent rect. 22 1
333 40.77 atmosphere 1005.0 30 > th dose dependent rect. 22 1
335 40.79 atmosphere 1005.0 30 > th dose independent rect. 22 1
341 40.81 atmosphere 1015.0 30 < th dose independent rect. 3 23
344 40.83 wind 3.0 30 < th dose independent rect. 22 1
346 40.83 precipitation 0.1 30 < th dose independent rect. 22 1
347 40.83 precipitation 0.1 30 < th dose dependent rect. 22 1
353 40.85 temperature 10.0 30 > th dose independent rect. 22 1
355 40.85 temperature 30.0 30 < th dose independent rect. 22 1
356 40.85 humidity 50.0 30 > th dose independent rect. 22 1
360 40.85 atmosphere 1010.0 30 < th dose independent rect. 22 1
362 40.85 radiation 1.0 30 < th dose independent rect. 22 1
368 40.85 temperature 10.0 30 > th dose independent rect. 23 23
369 40.85 wind 7.0 30 < th dose dependent rect. 22 1
372 40.85 radiation 1.0 30 < th dose dependent rect. 22 1
377 40.87 wind 1.0 30 > th dose independent rect. 22 1
383 40.90 humidity 50.0 30 > th dose dependent rect. 22 1
386 40.91 wind 1.0 30 > th dose dependent rect. 22 1
394 40.95 wind 9.0 720 < th dose independent rect. 15 8
397 40.98 atmosphere 1015.0 30 < th dose dependent rect. 22 1
398 40.99 wind 1.0 10 > th dose independent rect. 8 23
416 41.12 temperature 30.0 30 < th dose dependent rect. 22 1
417 41.13 precipitation 0.1 720 < th dose independent rect. 3 8
418 41.13 precipitation 0.1 720 < th dose dependent rect. 3 8
422 41.16 temperature 30.0 30 < th dose independent rect. 3 23
423 41.17 humidity 90.0 90 < th dose independent rect. 1 7
427 41.18 atmosphere 995.0 720 > th dose independent rect. 15 8
428 41.18 wind 9.0 720 < th dose independent rect. 23 16
433 41.19 radiation 10.0 30 < th dose dependent rect. 3 23
454 41.28 precipitation 0.1 720 < th dose independent rect. 23 16
457 41.28 precipitation 0.1 720 < th dose dependent rect. 23 16
458 41.29 atmosphere 995.0 720 > th dose independent rect. 11 16
473 41.35 wind 1.0 10 < th dose independent rect. 11 16
476 41.36 wind 9.0 30 < th dose independent rect. 23 23
481 41.39 wind 9.0 30 < th dose dependent rect. 3 23
482 41.40 wind 1.0 10 < th dose independent rect. 14 13
484 41.40 atmosphere 1005.0 30 > th dose dependent rect. 2 6
502 41.41 wind 1.0 10 < th dose independent rect. 17 10
521 41.43 radiation 10.0 30 < th dose independent rect. 3 23
528 41.46 atmosphere 1015.0 1440 < th dose independent rect. 3 1
539 41.51 wind 1.0 10 < th dose independent rect. 6 21
540 41.51 wind 1.0 30 > th dose dependent rect. 2 1
543 41.52 precipitation 0.1 720 < th dose independent rect. 19 8
544 41.52 precipitation 0.1 720 < th dose dependent rect. 19 8
545 41.53 atmosphere 995.0 720 > th dose independent rect. 7 8
557 41.57 temperature 10.0 720 > th dose independent rect. 7 8
558 41.57 atmosphere 1015.0 720 < th dose independent rect. 7 8
559 41.57 temperature 10.0 720 > th dose independent rect. 15 16
560 41.57 wind 1.0 10 < th dose independent rect. 8 19
564 41.57 humidity 50.0 30 > th dose dependent rect. 3 23
568 41.58 precipitation 0.1 720 < th dose independent rect. 15 16
572 41.58 precipitation 0.1 720 < th dose dependent rect. 15 16
575 41.59 temperature 25.0 10 < th dose independent rect. 2 7
578 41.60 wind 9.0 720 < th dose independent rect. 19 8
600 41.62 humidity 50.0 720 > th dose independent rect. 23 16
613 41.63 atmosphere 995.0 30 > th dose dependent rect. 3 23
628 41.64 temperature 10.0 720 > th dose independent rect. 19 8
629 41.64 temperature 30.0 720 < th dose independent rect. 19 8
630 41.64 humidity 50.0 720 > th dose independent rect. 19 8
631 41.64 atmosphere 995.0 720 > th dose independent rect. 19 8
632 41.64 radiation 1.0 720 < th dose independent rect. 19 8
637 41.64 temperature 10.0 720 > th dose independent rect. 3 16
644 41.64 radiation 1.0 720 < th dose dependent rect. 19 8
650 41.65 temperature 25.0 90 < th dose independent rect. 6 2
651 41.65 humidity 50.0 30 > th dose independent rect. 16 10
657 41.65 radiation 20.0 10 < th dose dependent rect. 16 10
658 41.65 radiation 40.0 30 < th dose dependent rect. 16 10
681 41.70 temperature 10.0 1440 > th dose independent rect. 17 10
685 41.70 radiation 30.0 1440 < th dose independent rect. 17 10
691 41.70 temperature 10.0 1440 > th dose independent rect. 3 14
697 41.72 atmosphere 995.0 30 > th dose independent rect. 16 10
699 41.72 radiation 10.0 10 < th dose independent rect. 16 10
700 41.72 humidity 50.0 30 > th dose independent rect. 2 14
701 41.72 precipitation 0.1 30 < th dose independent rect. 2 14
703 41.72 precipitation 0.1 30 < th dose dependent rect. 2 14
706 41.73 radiation 40.0 720 < th dose independent rect. 15 16
711 41.74 wind 9.0 720 < th dose independent rect. 11 16
741 41.76 temperature 10.0 30 > th dose independent rect. 16 10
745 41.76 temperature 10.0 30 > th dose independent rect. 2 14
747 41.76 atmosphere 1015.0 30 < th dose independent rect. 2 14
748 41.76 atmosphere 995.0 720 > th dose independent rect. 3 16
750 41.77 precipitation 0.1 720 < th dose independent rect. 7 8
751 41.77 wind 9.0 30 < th dose independent rect. 16 10
754 41.77 precipitation 0.1 30 < th dose independent rect. 16 10
757 41.77 atmosphere 1000.0 30 > th dose dependent rect. 7 1
759 41.77 precipitation 0.1 720 < th dose dependent rect. 7 8
761 41.77 precipitation 0.1 30 < th dose dependent rect. 16 10
775 41.79 atmosphere 995.0 30 > th dose independent rect. 2 14
783 41.80 temperature 25.0 10 < th dose independent rect. 7 1
793 41.80 atmosphere 995.0 720 > th dose independent rect. 15 16
801 41.80 temperature 25.0 720 > th dose dependent rect. 3 5
810 41.82 atmosphere 1005.0 30 > th dose independent rect. 7 1
812 41.82 wind 1.0 10 > th dose independent rect. 23 8
815 41.82 wind 5.0 30 < th dose dependent rect. 2 6
816 41.83 wind 1.0 10 > th dose independent sin 16 NA
828 41.84 radiation 10.0 10 > th dose independent rect. 16 16
839 41.85 wind 1.0 10 > th dose independent rect. 23 23
853 41.87 radiation 10.0 10 > th dose independent rect. 6 2
866 41.87 temperature 30.0 10 < th dose independent rect. 16 10
879 41.88 temperature 25.0 720 > th dose independent rect. 3 6
894 41.89 atmosphere 1015.0 720 < th dose independent rect. 3 16
901 41.90 wind 9.0 720 < th dose independent rect. 15 16
902 41.90 atmosphere 1000.0 30 > th dose independent rect. 8 18
915 41.92 humidity 90.0 30 < th dose independent rect. 7 1
917 41.92 wind 9.0 30 < th dose independent rect. 2 14
925 41.93 wind 5.0 30 < th dose independent rect. 2 6
926 41.93 atmosphere 1005.0 30 > th dose independent rect. 2 6
931 41.93 temperature 10.0 30 > th dose dependent rect. 3 23
945 41.95 radiation 1.0 10 > th dose dependent rect. 7 1
951 41.96 temperature 25.0 30 > th dose independent rect. 24 11
960 41.97 temperature 30.0 10 < th dose dependent rect. 7 1
968 41.98 humidity 90.0 720 < th dose independent rect. 1 2
969 41.98 wind 9.0 4320 < th dose independent rect. 3 6
994 42.00 wind 9.0 30 < th dose independent rect. 8 18