Os09g0539200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Relative to SR12 protein (Fragment).
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Os09g0539200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Relative to SR12 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.28 | 0.416 | 7.01 | -0.196 | 0.742 | 0.944 | -0.617 | -1.46 | 0.315 | 8.1 | 25.5 | 257 | -- | -- |
| 81.27 | 0.42 | 7.04 | -0.407 | 0.756 | 1.08 | -0.721 | -- | 0.246 | 7.76 | 24.71 | 353 | -- | -- |
| 79.26 | 0.415 | 7.01 | -0.195 | 0.742 | 0.953 | -- | -1.49 | 0.32 | 7.89 | 25.4 | 290 | -- | -- |
| 81.85 | 0.421 | 7.05 | -0.441 | 0.749 | 1.24 | -- | -- | 0.221 | 7.45 | 22.81 | 427 | -- | -- |
| 101.26 | 0.469 | 7 | -0.019 | -- | 1.31 | -- | -1.82 | 0.429 | -- | 28.3 | 472 | -- | -- |
| 97.46 | 0.463 | 7.09 | -0.709 | 0.841 | -- | -0.714 | -- | 0.0419 | 7.4 | -- | -- | -- | -- |
| 98.85 | 0.466 | 7.09 | -0.725 | 0.84 | -- | -- | -- | 0.0429 | 7.36 | -- | -- | -- | -- |
| 104.88 | 0.477 | 7.04 | -0.353 | -- | 1.35 | -- | -- | 0.35 | -- | 27.59 | 463 | -- | -- |
| 86.3 | 0.433 | 7.03 | -- | 0.727 | 1.49 | -- | -- | 0.282 | 7.4 | 22.44 | 454 | -- | -- |
| 136.42 | 0.546 | 7.1 | -0.712 | -- | -- | -- | -- | 0.0568 | -- | -- | -- | -- | -- |
| 112.72 | 0.497 | 7.07 | -- | 0.834 | -- | -- | -- | 0.124 | 7.42 | -- | -- | -- | -- |
| 107.88 | 0.484 | 7.02 | -- | -- | 1.5 | -- | -- | 0.419 | -- | 27.2 | 471 | -- | -- |
| 149.78 | 0.571 | 7.09 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.04 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 4 | 77.43 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 36 | 78.42 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 38 | 78.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 42 | 78.54 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 55 | 78.72 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 78 | 79.23 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 108 | 79.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 125 | 80.16 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 130 | 80.19 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 155 | 80.43 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 185 | 80.72 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 217 | 80.98 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 278 | 81.35 | atmosphere | 1000 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 358 | 81.70 | atmosphere | 1000 | 720 | > th | dose dependent | sin | 7 | NA |
| 361 | 81.71 | temperature | 20 | 270 | < th | dose independent | sin | 0 | NA |
| 367 | 81.74 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 372 | 81.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 381 | 81.78 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 393 | 81.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 400 | 81.83 | atmosphere | 1000 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 421 | 81.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 427 | 81.89 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 433 | 81.90 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 451 | 81.94 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 485 | 82.00 | humidity | 70 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 496 | 82.01 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 497 | 82.02 | temperature | 20 | 270 | > th | dose independent | sin | 1 | NA |
| 540 | 82.08 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 4 |
| 555 | 82.11 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 658 | 82.25 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 712 | 82.30 | atmosphere | 1015 | 720 | < th | dose dependent | sin | 7 | NA |
| 729 | 82.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 739 | 82.33 | humidity | 60 | 43200 | < th | dose independent | sin | 5 | NA |
| 746 | 82.33 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 18 |
| 751 | 82.34 | humidity | 70 | 43200 | < th | dose dependent | sin | 4 | NA |
| 768 | 82.35 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 773 | 82.36 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 774 | 82.36 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 17 |
| 815 | 82.39 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 896 | 82.47 | humidity | 60 | 43200 | > th | dose independent | sin | 6 | NA |
| 911 | 82.48 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 940 | 82.50 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 951 | 82.50 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 983 | 82.52 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 1 |