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Os09g0539000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.38 (0.0614) R2 : 0.532
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.17 (0.196) R2dC : 0.489 R2C : -0.198
β3 : -3.84 (0.237) R2dE : 0.498 R2E : -0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.51 (0.13) R2dN8 : 0.179 R2N8 : 0.198
σ : 1.15
deviance : 605.52
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C
peak time of C : 0.377
E
wheather : humidity
threshold : 78
memory length : 57
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.4
open length of G : 14

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
601.84 1.15 6.39 -0.793 3.52 -3.86 -0.554 -0.317 1.49 0.203 72.31 90 13 14
598.05 1.14 6.38 -0.728 3.46 -3.89 -0.566 -- 1.48 0.219 74.15 82 13.1 14
600.13 1.14 6.4 -0.672 3.49 -3.91 -- -0.255 1.49 0.186 74.24 84 13 14.2
597.13 1.14 6.38 -0.661 3.11 -3.73 -- -- 1.48 0.378 77 71 13.1 14.1
851.5 1.36 6.34 -0.438 -- -2.51 -- -0.0769 1.52 -- 66.34 1152 11.2 14.3
924.2 1.43 6.29 -0.893 1.17 -- -1.15 -- 1.69 1.94 -- -- -- --
929.2 1.43 6.29 -0.859 1.17 -- -- -- 1.7 2.06 -- -- -- --
737.18 1.26 6.21 -0.932 -- -3.62 -- -- 1.83 -- 50.25 1026 4.45 21.3
605.52 1.15 6.38 -- 3.17 -3.84 -- -- 1.51 0.377 78 57 13.4 14
1011.85 1.49 6.28 -0.81 -- -- -- -- 1.73 -- -- -- -- --
948.63 1.44 6.27 -- 1.16 -- -- -- 1.79 2.04 -- -- -- --
755.43 1.28 6.26 -- -- -3.47 -- -- 1.72 -- 48.98 1071 4.68 22.2
1029.15 1.5 6.26 -- -- -- -- -- 1.82 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 609.16 humidity 70 90 > th dose dependent rect. 13 14
5 612.45 humidity 70 90 > th dose dependent rect. 15 12
10 621.08 humidity 80 270 < th dose independent rect. 14 9
11 621.92 humidity 50 720 > th dose dependent rect. 15 8
14 623.45 humidity 70 90 > th dose dependent rect. 17 10
15 623.89 humidity 70 10 > th dose dependent sin 14 NA
22 626.11 humidity 80 10 > th dose dependent rect. 12 15
39 631.04 humidity 90 720 < th dose dependent rect. 14 10
48 632.35 humidity 80 270 > th dose independent rect. 15 11
53 633.19 humidity 80 10 > th dose dependent rect. 10 17
61 633.97 humidity 80 270 > th dose independent rect. 13 13
82 636.09 humidity 70 90 > th dose dependent rect. 19 8
83 636.09 humidity 80 10 > th dose dependent rect. 8 19
84 636.19 humidity 80 10 > th dose dependent rect. 7 21
103 639.43 humidity 90 720 < th dose dependent sin 16 NA
111 640.24 humidity 50 720 > th dose dependent sin 17 NA
114 640.73 humidity 70 270 > th dose dependent sin 17 NA
129 641.99 humidity 90 10 < th dose dependent sin 12 NA
131 642.07 humidity 80 90 > th dose dependent rect. 7 20
164 644.55 humidity 80 270 > th dose independent sin 17 NA
191 646.86 radiation 1 270 < th dose dependent rect. 5 22
202 647.63 humidity 90 270 < th dose dependent rect. 14 17
211 648.10 humidity 90 30 < th dose independent rect. 16 16
216 648.41 humidity 80 270 < th dose independent sin 16 NA
247 649.68 radiation 1 270 < th dose independent rect. 5 22
314 653.75 humidity 80 720 > th dose independent rect. 15 7
413 659.44 humidity 90 720 < th dose dependent rect. 11 13
512 664.02 humidity 80 10 > th dose independent rect. 13 15
519 664.35 humidity 80 720 > th dose independent rect. 11 11
707 671.03 temperature 15 270 > th dose dependent rect. 14 17
802 674.47 humidity 90 10 < th dose dependent rect. 16 16
973 680.00 humidity 50 720 > th dose dependent rect. 1 23