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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0537100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.67 (0.0314) R2 : 0.595
β1 : -1.55 (0.115) R2dD : 0.174 R2D : 0.113
β2 : 0.983 (0.0945) R2dC : 0.145 R2C : 0.272
β3 : 1.04 (0.107) R2dE : 0.136 R2E : 0.243
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.471 (0.067) R2dN8 : 0.0575 R2N8 : 0.00261
σ : 0.586
deviance : 158.33
__
_____
C
peak time of C : 20.4
E
wheather : temperature
threshold : 22.8
memory length : 255
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.4
open length of G : 2.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.54 0.559 3.67 -1.73 0.986 1.15 -1.98 -1.04 -0.484 20.6 24.7 263 14.4 2.28
142.83 0.557 3.66 -1.67 0.985 1.12 -2.28 -- -0.468 20.5 24.42 263 14.4 2.27
153.82 0.578 3.68 -1.72 0.992 1.13 -- -1.38 -0.459 20.3 24.4 262 14.4 2.32
158.33 0.586 3.67 -1.55 0.983 1.04 -- -- -0.471 20.4 22.8 255 14.4 2.63
176.93 0.62 3.64 -1.67 -- 1.61 -- -1.76 -0.516 -- 22.3 330 14.2 3.1
176.13 0.622 3.66 -1.58 1.57 -- -2.21 -- -0.401 19.6 -- -- -- --
189.91 0.645 3.66 -1.52 1.57 -- -- -- -0.404 19.6 -- -- -- --
181.94 0.628 3.66 -1.63 -- 1.66 -- -- -0.499 -- 22.36 338 13.9 3.92
223.69 0.697 3.64 -- 0.895 1.11 -- -- -0.339 20.6 22.5 237 14.4 3.23
322.55 0.839 3.63 -1.55 -- -- -- -- -0.428 -- -- -- -- --
251.01 0.741 3.63 -- 1.59 -- -- -- -0.234 19.5 -- -- -- --
246.8 0.732 3.6 -- -- 1.51 -- -- -0.399 -- 22.35 392 13.7 4.14
385.52 0.916 3.59 -- -- -- -- -- -0.256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.51 temperature 25.0 270 > th dose independent rect. 14 3
2 144.41 temperature 15.0 270 > th dose dependent rect. 14 3
4 144.67 temperature 25.0 270 > th dose independent rect. 15 1
6 145.42 temperature 20.0 30 > th dose independent rect. 15 5
8 145.61 temperature 20.0 270 > th dose dependent rect. 15 1
19 146.76 atmosphere 1015.0 270 < th dose dependent rect. 15 2
24 146.84 atmosphere 1015.0 270 < th dose dependent rect. 14 4
28 147.02 temperature 15.0 10 > th dose dependent rect. 15 5
36 147.57 humidity 90.0 90 < th dose independent rect. 15 4
52 148.67 humidity 90.0 270 < th dose dependent rect. 14 3
63 149.16 atmosphere 1015.0 10 < th dose dependent rect. 16 4
75 149.47 temperature 15.0 10 > th dose independent rect. 20 19
76 149.48 radiation 1.0 270 > th dose independent rect. 14 3
105 150.36 humidity 90.0 270 < th dose dependent rect. 15 1
108 150.38 precipitation 0.1 270 < th dose independent rect. 17 21
109 150.38 precipitation 0.1 270 < th dose dependent rect. 17 21
122 150.69 radiation 1.0 270 > th dose independent rect. 15 1
128 150.83 atmosphere 995.0 270 > th dose independent rect. 17 21
135 151.04 atmosphere 1005.0 270 < th dose independent rect. 16 2
151 151.60 temperature 10.0 270 > th dose independent rect. 14 3
155 151.60 temperature 10.0 270 > th dose independent rect. 17 21
157 151.67 wind 1.0 270 > th dose independent rect. 14 3
158 151.68 precipitation 0.1 270 < th dose independent rect. 16 23
159 151.68 precipitation 0.1 270 < th dose dependent rect. 16 23
165 151.81 precipitation 0.1 270 < th dose independent rect. 14 3
166 151.81 precipitation 0.1 270 < th dose dependent rect. 14 3
175 152.02 wind 9.0 270 < th dose independent rect. 17 21
178 152.15 humidity 50.0 270 > th dose independent rect. 17 21
189 152.27 precipitation 0.1 90 < th dose independent rect. 19 20
190 152.27 precipitation 0.1 90 < th dose dependent rect. 19 20
194 152.36 radiation 1.0 270 > th dose independent rect. 14 5
204 152.37 atmosphere 995.0 10 > th dose independent rect. 15 5
206 152.40 humidity 70.0 270 < th dose independent rect. 14 19
207 152.41 wind 9.0 270 < th dose independent rect. 14 3
209 152.45 wind 1.0 10 > th dose independent rect. 15 5
210 152.45 precipitation 0.1 10 < th dose independent rect. 15 5
211 152.45 precipitation 0.1 10 < th dose dependent rect. 15 5
216 152.55 radiation 40.0 10 < th dose independent rect. 15 5
219 152.58 temperature 10.0 10 > th dose independent rect. 15 5
221 152.58 atmosphere 1010.0 10 < th dose independent rect. 15 5
224 152.58 atmosphere 995.0 10 > th dose independent rect. 20 19
225 152.59 atmosphere 995.0 270 > th dose independent rect. 14 3
238 152.73 radiation 30.0 90 < th dose independent rect. 15 4
273 152.98 precipitation 0.1 10 < th dose independent rect. 20 19
274 152.98 precipitation 0.1 10 < th dose dependent rect. 20 19
287 153.01 radiation 40.0 10 < th dose dependent rect. 14 6
301 153.21 precipitation 0.1 270 < th dose independent rect. 15 1
303 153.21 precipitation 0.1 270 < th dose dependent rect. 15 1
304 153.22 temperature 10.0 270 > th dose independent rect. 15 1
308 153.22 temperature 10.0 270 > th dose independent rect. 16 23
316 153.28 temperature 10.0 1440 > th dose independent rect. 16 5
319 153.28 temperature 10.0 1440 > th dose independent rect. 21 19
324 153.34 wind 1.0 90 > th dose dependent rect. 15 4
343 153.42 temperature 10.0 270 > th dose dependent rect. 2 16
382 153.62 atmosphere 995.0 270 > th dose independent rect. 15 1
402 153.75 humidity 90.0 10 < th dose dependent rect. 16 4
419 153.83 radiation 10.0 270 < th dose dependent sin 15 NA
432 153.93 wind 9.0 30 < th dose independent rect. 15 5
448 154.04 humidity 80.0 270 < th dose dependent rect. 14 19
464 154.12 wind 9.0 10 < th dose independent rect. 20 19
466 154.14 wind 9.0 270 < th dose independent rect. 15 1
469 154.16 humidity 50.0 90 > th dose independent rect. 19 20
475 154.22 radiation 1.0 270 > th dose dependent rect. 14 17
482 154.27 atmosphere 1005.0 270 > th dose independent rect. 16 8
500 154.49 atmosphere 1015.0 10 < th dose independent rect. 20 19
515 154.53 radiation 1.0 270 > th dose independent sin 15 NA
516 154.53 atmosphere 1005.0 270 > th dose independent rect. 17 6
532 154.56 radiation 1.0 270 < th dose independent sin 15 NA
537 154.60 humidity 50.0 10 > th dose independent rect. 15 5
541 154.61 temperature 10.0 10 > th dose dependent rect. 3 17
580 154.88 radiation 1.0 270 > th dose dependent rect. 15 1
592 155.00 temperature 15.0 90 > th dose independent rect. 19 8
594 155.01 temperature 30.0 270 < th dose independent rect. 17 9
614 155.15 radiation 1.0 270 > th dose dependent rect. 14 4
672 155.27 radiation 1.0 270 < th dose independent rect. 6 20
673 155.27 wind 1.0 10 > th dose dependent rect. 15 5
677 155.29 radiation 1.0 270 < th dose dependent rect. 5 21
726 155.54 radiation 10.0 270 > th dose independent sin 13 NA
808 155.85 temperature 15.0 90 > th dose independent rect. 3 16
813 155.88 atmosphere 1005.0 90 < th dose independent rect. 15 8
907 156.30 humidity 60.0 270 > th dose independent rect. 17 9
916 156.32 radiation 40.0 10 < th dose dependent rect. 12 8
936 156.41 temperature 20.0 90 > th dose independent rect. 1 18
938 156.42 temperature 15.0 10 > th dose independent rect. 20 7
946 156.44 atmosphere 1005.0 270 > th dose independent rect. 19 2
968 156.51 humidity 50.0 270 > th dose independent rect. 9 14
981 156.56 atmosphere 1005.0 90 > th dose independent rect. 19 8