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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0537000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.39 (0.0319) R2 : 0.874
β1 : -3.18 (0.118) R2dD : 0.213 R2D : 0.146
β2 : 1.64 (0.088) R2dC : 0.108 R2C : 0.257
β3 : 4.09 (0.106) R2dE : 0.479 R2E : 0.551
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.291 (0.069) R2dN8 : 0.0067 R2N8 : -0.0194
σ : 0.596
deviance : 163.58
__
_____
C
peak time of C : 17.6
E
wheather : temperature
threshold : 8.615
memory length : 284
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.6
open length of G : 17.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.57 0.597 6.38 -3.09 1.62 4.06 -0.94 0.797 -0.265 17.5 9.022 274 11.8 17.4
162.45 0.594 6.39 -3.14 1.62 4.12 -0.917 -- -0.285 17.4 8.827 276 11.8 17.4
163.29 0.595 6.39 -3.06 1.68 4.02 -- 0.66 -0.266 17.5 8.282 279 11.8 17.5
163.58 0.596 6.39 -3.18 1.64 4.09 -- -- -0.291 17.6 8.615 284 11.6 17.6
220.91 0.692 6.35 -3.13 -- 5.2 -- 2.22 -0.284 -- 11.03 325 10.7 17.1
385.33 0.92 6.37 -2.61 3.58 -- 1.19 -- 0.126 20.2 -- -- -- --
389.63 0.924 6.37 -2.65 3.58 -- -- -- 0.127 20.2 -- -- -- --
207.15 0.67 6.36 -3.36 -- 4.99 -- -- -0.288 -- 11.39 291 11.2 16.1
412.43 0.946 6.27 -- 2.12 3.6 -- -- 0.184 16.7 -4.577 286 12.1 16.8
1097.54 1.55 6.28 -2.67 -- -- -- -- 0.0861 -- -- -- -- --
574.32 1.12 6.3 -- 3.6 -- -- -- 0.422 20.2 -- -- -- --
483.27 1.02 6.26 -- -- 4.33 -- -- 0.19 -- 7.437 280 11.5 15.2
1286.2 1.67 6.21 -- -- -- -- -- 0.383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.38 temperature 10.0 270 > th dose dependent rect. 12 17
31 195.24 temperature 10.0 270 > th dose dependent rect. 11 8
32 196.33 temperature 15.0 10 > th dose dependent rect. 14 17
62 207.30 radiation 30.0 270 < th dose dependent rect. 15 10
74 210.52 radiation 1.0 270 > th dose independent rect. 11 8
105 214.29 temperature 20.0 270 > th dose independent rect. 11 8
107 214.62 radiation 20.0 270 < th dose independent rect. 16 9
122 215.48 humidity 50.0 270 > th dose independent rect. 16 9
139 217.99 humidity 90.0 270 < th dose independent rect. 11 7
140 218.04 radiation 1.0 270 < th dose independent rect. 15 10
151 218.74 temperature 20.0 270 > th dose independent rect. 12 17
155 219.05 temperature 30.0 270 < th dose independent rect. 16 9
156 219.14 radiation 1.0 270 < th dose independent rect. 8 16
189 221.46 temperature 10.0 270 > th dose dependent rect. 24 18
192 221.54 radiation 1.0 270 > th dose independent sin 18 NA
198 221.83 radiation 1.0 270 < th dose dependent rect. 6 18
232 223.06 precipitation 0.1 270 < th dose independent rect. 5 7
233 223.06 precipitation 0.1 270 < th dose dependent rect. 5 7
239 223.21 temperature 10.0 270 > th dose independent rect. 5 7
240 223.21 atmosphere 995.0 270 > th dose independent rect. 5 7
241 223.21 atmosphere 1015.0 270 < th dose independent rect. 5 7
242 223.21 temperature 10.0 270 > th dose independent rect. 12 17
246 223.51 temperature 10.0 270 > th dose dependent rect. 23 7
258 224.13 atmosphere 1010.0 270 < th dose independent rect. 11 8
260 224.26 atmosphere 1015.0 270 < th dose independent rect. 12 17
261 224.39 radiation 1.0 270 < th dose independent sin 18 NA
266 224.48 wind 9.0 270 < th dose independent rect. 5 7
269 224.59 atmosphere 995.0 270 > th dose independent rect. 17 8
282 225.22 temperature 15.0 270 > th dose independent rect. 1 16
286 225.38 wind 9.0 270 < th dose independent rect. 12 17
294 225.51 radiation 1.0 270 < th dose dependent sin 18 NA
295 225.52 temperature 10.0 270 > th dose independent rect. 17 8
300 225.52 atmosphere 1015.0 270 < th dose independent rect. 1 16
315 225.83 wind 9.0 270 < th dose independent rect. 17 8
337 226.51 precipitation 0.1 270 < th dose independent rect. 12 17
338 226.51 precipitation 0.1 270 < th dose dependent rect. 12 17
352 227.43 wind 9.0 270 < th dose independent rect. 1 16
365 228.13 precipitation 0.1 270 < th dose independent rect. 1 16
366 228.13 precipitation 0.1 270 < th dose dependent rect. 1 16
368 228.19 atmosphere 995.0 270 > th dose independent rect. 18 17
379 228.53 wind 1.0 270 > th dose independent rect. 17 8
382 228.53 temperature 10.0 270 > th dose independent rect. 19 16
397 229.11 wind 9.0 270 < th dose independent rect. 19 16
399 229.16 precipitation 0.1 270 < th dose independent rect. 11 8
400 229.16 precipitation 0.1 270 < th dose dependent rect. 11 8
415 229.76 radiation 20.0 270 < th dose dependent rect. 23 8
416 229.80 atmosphere 1010.0 270 < th dose independent rect. 23 7
432 230.44 wind 9.0 270 < th dose independent rect. 11 8
433 230.46 precipitation 0.1 270 < th dose independent rect. 17 8
434 230.46 precipitation 0.1 270 < th dose dependent rect. 17 8
439 230.86 humidity 50.0 270 > th dose independent rect. 19 16
441 230.92 humidity 50.0 270 > th dose dependent rect. 23 7
444 231.04 radiation 10.0 270 < th dose independent rect. 23 8
467 231.73 temperature 30.0 270 < th dose dependent rect. 16 8
473 231.90 humidity 50.0 270 > th dose independent rect. 5 7
475 231.92 precipitation 0.1 270 < th dose independent rect. 18 17
476 231.92 precipitation 0.1 270 < th dose dependent rect. 18 17
509 232.84 temperature 15.0 270 > th dose independent rect. 23 7
520 233.66 temperature 30.0 90 < th dose dependent rect. 17 10
530 233.96 wind 1.0 270 > th dose independent rect. 11 7
538 234.24 temperature 30.0 270 < th dose independent rect. 23 7
539 234.24 humidity 50.0 270 > th dose independent rect. 23 7
542 234.24 atmosphere 995.0 270 > th dose independent rect. 23 7
546 234.24 temperature 10.0 270 > th dose independent rect. 6 17
548 234.29 wind 9.0 270 < th dose independent rect. 23 7
551 234.33 temperature 30.0 270 < th dose independent rect. 18 17
557 234.53 wind 1.0 270 > th dose independent rect. 5 7
564 235.09 wind 9.0 270 < th dose independent rect. 6 17
618 236.34 precipitation 0.1 270 < th dose independent rect. 23 7
619 236.34 precipitation 0.1 270 < th dose dependent rect. 23 7
621 236.39 radiation 1.0 270 > th dose independent rect. 4 8
663 237.36 atmosphere 995.0 270 > th dose independent rect. 1 15
664 237.40 temperature 30.0 10 < th dose dependent rect. 18 9
670 237.57 temperature 30.0 270 < th dose dependent rect. 6 18
734 239.27 wind 1.0 270 > th dose independent rect. 18 17
769 239.94 atmosphere 995.0 270 > th dose independent rect. 6 17
786 240.13 wind 9.0 270 < th dose dependent rect. 23 7
792 240.32 precipitation 0.1 270 < th dose independent rect. 6 17
793 240.32 precipitation 0.1 270 < th dose dependent rect. 6 17
796 240.38 temperature 15.0 10 > th dose dependent rect. 13 7
818 240.85 humidity 50.0 270 > th dose dependent rect. 16 8
833 241.11 atmosphere 995.0 270 > th dose dependent rect. 17 7
911 242.49 temperature 30.0 270 < th dose independent rect. 6 18