Os09g0536400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thaumatin-like protein 1 precursor.
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Os09g0536400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thaumatin-like protein 1 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.39 | 0.461 | 10.4 | -1.39 | 2.17 | -0.464 | 0.78 | -0.646 | -0.137 | 17.8 | 20.88 | 15 | -- | -- |
| 98.3 | 0.462 | 10.4 | -1.42 | 2.17 | -0.457 | 0.774 | -- | -0.138 | 17.9 | 20.93 | 15 | -- | -- |
| 97.87 | 0.461 | 10.4 | -1.4 | 2.17 | -0.466 | -- | -0.634 | -0.135 | 17.9 | 20.94 | 15 | -- | -- |
| 99.74 | 0.465 | 10.4 | -1.42 | 2.18 | -0.466 | -- | -- | -0.131 | 17.9 | 20.95 | 15 | -- | -- |
| 340.39 | 0.859 | 10.4 | -1.5 | -- | -0.303 | -- | -0.796 | -0.153 | -- | 19.09 | 15 | -- | -- |
| 106.14 | 0.483 | 10.4 | -1.45 | 2.15 | -- | 0.898 | -- | -0.145 | 18.5 | -- | -- | -- | -- |
| 108.15 | 0.487 | 10.4 | -1.47 | 2.15 | -- | -- | -- | -0.142 | 18.5 | -- | -- | -- | -- |
| 341.92 | 0.861 | 10.4 | -1.49 | -- | -0.281 | -- | -- | -0.169 | -- | 17.7 | 15 | -- | -- |
| 152.2 | 0.575 | 10.4 | -- | 2.18 | -0.506 | -- | -- | 0.00746 | 17.8 | 20.75 | 10 | -- | -- |
| 349.43 | 0.873 | 10.4 | -1.52 | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
| 164.81 | 0.601 | 10.4 | -- | 2.17 | -- | -- | -- | 0.0208 | 18.4 | -- | -- | -- | -- |
| 389.84 | 0.923 | 10.3 | -- | -- | -0.426 | -- | -- | -0.00707 | -- | 4.847 | 9 | -- | -- |
| 410.41 | 0.946 | 10.3 | -- | -- | -- | -- | -- | -0.0187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 33 | 89.32 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 10 |
| 40 | 89.81 | wind | 1.0 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 43 | 89.87 | wind | 3.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 48 | 90.01 | wind | 3.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 66 | 90.36 | wind | 1.0 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 73 | 90.48 | wind | 3.0 | 270 | > th | dose independent | rect. | 11 | 6 |
| 77 | 90.54 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 85 | 90.72 | radiation | 1.0 | 270 | < th | dose independent | rect. | 14 | 7 |
| 88 | 90.75 | radiation | 20.0 | 10 | < th | dose independent | rect. | 22 | 21 |
| 90 | 90.76 | wind | 1.0 | 90 | > th | dose dependent | rect. | 6 | 13 |
| 140 | 91.39 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 147 | 91.48 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 151 | 91.50 | radiation | 1.0 | 90 | < th | dose dependent | sin | 17 | NA |
| 170 | 91.74 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 19 |
| 178 | 91.77 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 191 | 91.86 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 22 | 21 |
| 203 | 91.97 | radiation | 1.0 | 270 | > th | dose independent | sin | 21 | NA |
| 221 | 92.09 | radiation | 1.0 | 270 | < th | dose independent | sin | 20 | NA |
| 232 | 92.14 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 5 |
| 250 | 92.19 | radiation | 1.0 | 270 | < th | dose dependent | sin | 21 | NA |
| 273 | 92.28 | radiation | 1.0 | 90 | > th | dose independent | sin | 17 | NA |
| 274 | 92.28 | radiation | 1.0 | 90 | < th | dose independent | sin | 17 | NA |
| 286 | 92.38 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 293 | 92.40 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 20 |
| 296 | 92.42 | temperature | 20.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 318 | 92.52 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 18 |
| 325 | 92.56 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 14 |
| 333 | 92.61 | humidity | 90.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 364 | 92.74 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 14 | 14 |
| 385 | 92.83 | radiation | 20.0 | 30 | < th | dose independent | rect. | 7 | 12 |
| 399 | 92.88 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 400 | 92.90 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 5 |
| 424 | 92.99 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 427 | 93.00 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 434 | 93.05 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 438 | 93.05 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 6 |
| 445 | 93.07 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 450 | 93.10 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 455 | 93.13 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 460 | 93.14 | humidity | 70.0 | 270 | > th | dose independent | rect. | 15 | 7 |
| 470 | 93.16 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 498 | 93.23 | wind | 5.0 | 90 | < th | dose independent | rect. | 19 | 19 |
| 547 | 93.40 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 620 | 93.49 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 4 |
| 623 | 93.52 | wind | 3.0 | 90 | > th | dose independent | rect. | 14 | 5 |
| 659 | 93.63 | wind | 3.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 678 | 93.68 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 14 | 5 |
| 724 | 93.82 | temperature | 30.0 | 10 | < th | dose dependent | sin | 3 | NA |
| 732 | 93.84 | humidity | 80.0 | 270 | < th | dose independent | rect. | 14 | 2 |
| 736 | 93.84 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 738 | 93.85 | temperature | 20.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 748 | 93.88 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 19 |
| 754 | 93.90 | radiation | 20.0 | 10 | < th | dose independent | rect. | 9 | 10 |
| 779 | 93.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 19 |
| 782 | 93.95 | wind | 1.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 785 | 93.96 | temperature | 25.0 | 30 | < th | dose independent | sin | 4 | NA |
| 810 | 94.01 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 822 | 94.04 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 889 | 94.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 14 |
| 894 | 94.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 14 |
| 902 | 94.14 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 906 | 94.14 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 6 |
| 931 | 94.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 10 |
| 934 | 94.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 937 | 94.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 947 | 94.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 952 | 94.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 19 |
| 965 | 94.24 | temperature | 25.0 | 30 | > th | dose independent | sin | 4 | NA |
| 984 | 94.28 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 5 |
| 985 | 94.28 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 14 | 5 |
| 988 | 94.28 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 14 | 5 |