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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0535500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0143) R2 : 5.29e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000469 (0.0302) R2dN8 : 6.83e-07 R2N8 : 5.29e-07
σ : 0.27
deviance : 33.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.41 0.246 2.93 -0.171 0.139 0.583 -0.126 -2.01 0.0156 10.7 0.1853 3181 -- --
29.79 0.254 2.9 -0.214 0.153 0.372 -0.174 -- 0.0107 10.4 0.3107 3469 -- --
27.48 0.244 2.93 -0.176 0.14 0.591 -- -2.02 0.0158 10.8 0.1754 3181 -- --
29.9 0.255 2.91 -0.224 0.157 0.351 -- -- 0.00383 10.7 0.3675 3469 -- --
28.67 0.249 2.93 -0.18 -- 0.615 -- -2.13 0.0162 -- 0.2492 3174 -- --
31.08 0.261 2.91 -0.146 0.159 -- -0.201 -- -0.0152 10.9 -- -- -- --
31.25 0.262 2.91 -0.154 0.16 -- -- -- -0.0158 11 -- -- -- --
31.39 0.261 2.91 -0.224 -- 0.381 -- -- 0.0099 -- 0.05652 3470 -- --
31.05 0.26 2.9 -- 0.157 0.269 -- -- 0.0279 10.9 0.4535 3540 -- --
32.84 0.268 2.91 -0.157 -- -- -- -- -0.017 -- -- -- -- --
31.87 0.264 2.91 -- 0.161 -- -- -- 0.00135 11.1 -- -- -- --
32.61 0.266 2.9 -- -- 0.284 -- -- 0.0264 -- 0.4072 3529 -- --
33.49 0.27 2.91 -- -- -- -- -- 0.000469 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.44 wind 1 90 < th dose independent rect. 9 2
2 25.94 wind 1 30 < th dose independent rect. 9 5
10 26.61 humidity 70 30 < th dose dependent rect. 9 2
14 26.69 humidity 90 720 < th dose independent rect. 3 1
15 26.70 humidity 60 1440 > th dose independent rect. 8 1
16 26.71 temperature 20 270 < th dose independent rect. 9 1
17 26.72 humidity 60 1440 > th dose independent rect. 3 6
18 26.73 wind 1 30 < th dose dependent rect. 9 5
24 26.81 humidity 60 1440 > th dose independent rect. 1 8
25 26.82 wind 1 10 < th dose independent rect. 6 4
30 26.87 humidity 60 270 < th dose independent rect. 8 1
56 26.87 humidity 60 270 < th dose dependent rect. 8 1
105 26.88 humidity 60 1440 > th dose independent rect. 22 11
109 26.88 humidity 60 90 < th dose independent rect. 18 15
110 26.88 humidity 60 30 < th dose independent rect. 17 17
112 26.88 humidity 60 90 < th dose dependent rect. 18 15
113 26.88 humidity 60 90 < th dose dependent rect. 17 17
114 26.89 humidity 60 10 < th dose independent rect. 10 1
227 26.90 radiation 40 30 > th dose dependent rect. 9 2
322 26.91 wind 1 10 < th dose dependent rect. 9 1
356 26.97 wind 1 10 < th dose independent rect. 9 1
592 27.37 humidity 60 720 > th dose dependent rect. 2 7
647 27.48 humidity 90 720 < th dose dependent rect. 3 4
656 27.54 radiation 40 10 > th dose dependent sin 12 NA
664 27.57 humidity 90 720 < th dose dependent rect. 3 2
679 27.61 radiation 40 30 > th dose independent rect. 9 2
703 27.62 humidity 80 270 < th dose independent rect. 1 8
748 27.68 humidity 80 270 < th dose independent rect. 6 3
895 27.84 wind 1 10 < th dose independent sin 21 NA
919 27.87 temperature 20 270 < th dose dependent rect. 8 9
924 27.88 wind 1 10 < th dose dependent sin 21 NA
925 27.88 temperature 20 270 < th dose dependent rect. 8 4
957 27.91 humidity 90 720 < th dose dependent rect. 1 8
989 27.96 humidity 80 720 > th dose independent rect. 2 7