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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0535200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0231) R2 : 0.0169
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.136 (0.0486) R2dN8 : 0.0219 R2N8 : 0.0169
σ : 0.435
deviance : 86.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.08 0.42 3.43 0.119 0.0569 0.247 0.163 1.91 -0.163 17.8 93.33 5914 -- --
85.18 0.43 3.42 -0.0302 0.0309 0.314 0.293 -- -0.209 17 97.24 6357 -- --
80.1 0.417 3.43 0.123 0.0522 0.232 -- 1.91 -0.153 18.8 93 5980 -- --
85.31 0.43 3.42 -0.0133 0.038 0.307 -- -- -0.203 20.8 209 6289 -- --
80.25 0.417 3.43 0.111 -- 0.27 -- 1.94 -0.167 -- 91 6149 -- --
86.56 0.436 3.41 -0.0456 0.0465 -- 0.25 -- -0.142 17.1 -- -- -- --
86.59 0.436 3.41 -0.0462 0.0678 -- -- -- -0.141 19.9 -- -- -- --
85.38 0.43 3.42 -0.0145 -- 0.318 -- -- -0.205 -- 209.7 6349 -- --
85.32 0.43 3.42 -- 0.0382 0.305 -- -- -0.202 20.7 212.8 6309 -- --
86.84 0.435 3.41 -0.047 -- -- -- -- -0.142 -- -- -- -- --
86.65 0.435 3.41 -- 0.0681 -- -- -- -0.135 19.8 -- -- -- --
85.39 0.43 3.42 -- -- 0.321 -- -- -0.205 -- 226.4 6349 -- --
86.9 0.435 3.4 -- -- -- -- -- -0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.82 radiation 30 720 > th dose independent rect. 15 18
2 80.35 temperature 30 720 < th dose independent rect. 1 12
3 80.39 atmosphere 1005 30 > th dose dependent rect. 2 3
6 80.46 temperature 30 720 < th dose independent rect. 24 14
7 80.53 wind 1 14400 < th dose independent rect. 5 1
8 80.61 wind 1 14400 > th dose independent rect. 5 1
9 80.66 radiation 20 720 > th dose dependent rect. 15 18
10 80.70 temperature 30 720 < th dose independent rect. 9 4
11 80.74 temperature 25 270 > th dose independent rect. 1 1
12 80.78 temperature 30 720 < th dose independent rect. 2 10
13 80.81 humidity 70 1440 < th dose independent rect. 10 1
14 80.85 humidity 70 1440 > th dose independent rect. 10 1
15 80.88 temperature 25 30 > th dose dependent rect. 17 18
16 80.89 temperature 30 270 < th dose independent rect. 15 13
18 80.92 temperature 30 720 < th dose independent rect. 1 20
22 80.95 humidity 90 90 < th dose dependent rect. 17 17
23 81.00 temperature 30 720 < th dose independent rect. 14 1
24 81.01 radiation 30 720 > th dose independent sin 12 NA
26 81.01 temperature 30 720 < th dose independent rect. 15 22
27 81.01 temperature 25 270 > th dose dependent rect. 1 1
32 81.05 temperature 30 720 < th dose independent rect. 9 19
33 81.06 humidity 60 4320 > th dose independent rect. 12 1
36 81.08 temperature 25 90 > th dose independent rect. 1 4
37 81.08 humidity 50 4320 > th dose dependent rect. 11 3
38 81.08 humidity 50 4320 > th dose dependent rect. 10 7
40 81.09 humidity 60 90 > th dose dependent rect. 10 19
41 81.10 humidity 60 720 > th dose independent rect. 14 1
42 81.11 humidity 70 270 > th dose independent rect. 17 12
45 81.11 humidity 50 4320 > th dose dependent rect. 10 5
47 81.11 humidity 80 4320 < th dose dependent rect. 11 6
49 81.12 humidity 60 4320 < th dose independent rect. 12 1
50 81.12 temperature 25 90 > th dose dependent rect. 1 4
53 81.13 humidity 80 4320 < th dose dependent rect. 13 3
56 81.14 humidity 70 14400 > th dose independent rect. 8 2
57 81.14 humidity 60 4320 > th dose independent rect. 11 3
75 81.17 humidity 70 14400 > th dose independent rect. 4 6
76 81.17 humidity 70 14400 > th dose independent rect. 1 9
77 81.17 humidity 70 4320 > th dose independent rect. 9 9
78 81.17 humidity 70 4320 < th dose independent rect. 9 9
80 81.17 temperature 30 270 < th dose independent rect. 9 11
81 81.17 humidity 70 14400 > th dose independent rect. 22 12
85 81.18 humidity 70 14400 > th dose independent rect. 6 4
102 81.20 humidity 70 4320 > th dose independent rect. 14 22
109 81.20 humidity 50 4320 > th dose dependent rect. 5 12
123 81.22 radiation 40 720 < th dose independent rect. 10 1
129 81.22 humidity 70 4320 > th dose independent rect. 4 14
132 81.22 humidity 70 4320 > th dose independent rect. 21 21
161 81.23 wind 1 14400 < th dose dependent rect. 5 2
176 81.24 humidity 70 4320 > th dose independent rect. 9 22
182 81.25 humidity 70 4320 > th dose independent rect. 9 4
238 81.27 humidity 70 4320 > th dose independent sin 23 NA
265 81.27 humidity 90 4320 < th dose dependent rect. 4 13
267 81.27 humidity 90 4320 < th dose dependent rect. 23 19
270 81.28 humidity 80 14400 > th dose independent rect. 2 12
273 81.28 temperature 30 720 < th dose independent rect. 8 14
291 81.28 humidity 80 4320 < th dose dependent rect. 10 21
294 81.29 humidity 70 4320 > th dose independent no NA NA
295 81.29 humidity 70 4320 < th dose independent sin 0 NA
296 81.29 humidity 70 14400 < th dose independent rect. 8 2
366 81.29 humidity 50 4320 > th dose dependent sin 1 NA
372 81.29 humidity 80 4320 < th dose dependent rect. 10 14
386 81.30 humidity 80 14400 > th dose independent rect. 4 10
412 81.30 humidity 70 4320 < th dose independent rect. 14 22
420 81.30 humidity 80 4320 < th dose dependent rect. 10 12
468 81.32 atmosphere 1000 90 > th dose independent rect. 3 23
508 81.34 humidity 70 4320 < th dose independent rect. 9 4
512 81.34 humidity 70 4320 < th dose independent rect. 9 6
529 81.34 humidity 50 270 > th dose dependent rect. 16 12
539 81.35 humidity 70 4320 < th dose independent no NA NA
612 81.35 humidity 90 4320 < th dose dependent sin 23 NA
621 81.35 humidity 80 14400 < th dose dependent rect. 24 10
631 81.36 humidity 80 14400 < th dose independent rect. 5 9
634 81.36 radiation 40 720 < th dose independent rect. 1 12
651 81.37 humidity 70 14400 < th dose independent rect. 6 4
669 81.37 humidity 80 4320 < th dose dependent sin 20 NA
700 81.38 humidity 80 14400 > th dose dependent rect. 7 6
788 81.41 humidity 70 4320 > th dose independent rect. 15 3
951 81.44 temperature 30 270 < th dose independent rect. 7 23
977 81.44 humidity 90 4320 < th dose dependent rect. 5 20
985 81.45 radiation 40 720 < th dose independent rect. 9 4
994 81.45 temperature 25 30 > th dose dependent sin 11 NA