FiT-DB / Search/ Help/ Sample detail

Os09g0533900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CEL5=CELLULASE 5 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.67 (0.0517) R2 : 0.575
β1 : -4.05 (0.194) R2dD : 0.443 R2D : 0.266
β2 : 1.19 (0.128) R2dC : 0.0809 R2C : 0.0458
β3 : 2.35 (0.148) R2dE : 0.25 R2E : 0.0634
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.301 (0.11) R2dN8 : 0.0098 R2N8 : -0.0106
σ : 0.966
deviance : 429.91
__
_____
C
peak time of C : 9.21
E
wheather : temperature
threshold : 27.12
memory length : 1225
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
415.97 0.958 9.87 -5.64 1.22 3.08 1.15 -6.69 -0.649 9.01 26.84 1231 -- --
424.85 0.96 9.66 -4.02 1.23 2.37 1.6 -- -0.291 9.02 27.2 1203 -- --
420.36 0.955 9.88 -5.61 1.22 3.07 -- -6.65 -0.661 9.11 26.84 1234 -- --
429.91 0.966 9.67 -4.05 1.19 2.35 -- -- -0.301 9.21 27.12 1225 -- --
494.82 1.04 9.91 -5.6 -- 2.84 -- -6.23 -0.659 -- 26.77 1329 -- --
650.65 1.2 9.68 -3.4 1.03 -- 1.8 -- -0.323 7.51 -- -- -- --
658.84 1.2 9.68 -3.35 1.03 -- -- -- -0.323 7.92 -- -- -- --
501.71 1.04 9.72 -4.05 -- 2.17 -- -- -0.326 -- 27 1328 -- --
827.2 1.34 9.54 -- 1.11 1.7 -- -- 0.416 8.99 31.86 1116 -- --
716.76 1.25 9.71 -3.34 -- -- -- -- -0.31 -- -- -- -- --
954.87 1.45 9.6 -- 1.01 -- -- -- 0.0498 8.15 -- -- -- --
894.38 1.39 9.55 -- -- 1.51 -- -- 0.38 -- 31.51 1242 -- --
1011.09 1.48 9.62 -- -- -- -- -- 0.0608 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 432.33 temperature 25 1440 > th dose dependent rect. 15 2
2 433.68 humidity 80 1440 < th dose dependent rect. 15 6
7 434.63 temperature 25 1440 > th dose dependent rect. 13 6
10 434.74 temperature 25 1440 > th dose dependent rect. 13 10
11 434.89 humidity 80 1440 < th dose dependent rect. 15 17
47 437.20 humidity 70 14400 < th dose independent rect. 18 13
62 438.01 humidity 80 1440 < th dose dependent sin 14 NA
66 438.23 temperature 25 1440 > th dose dependent rect. 13 19
83 438.90 humidity 70 14400 < th dose independent rect. 18 2
84 439.01 humidity 70 14400 < th dose independent rect. 18 4
95 439.14 temperature 25 1440 > th dose dependent sin 18 NA
103 439.46 temperature 25 720 > th dose dependent rect. 17 16
104 439.47 humidity 70 1440 < th dose independent sin 14 NA
111 439.70 humidity 80 1440 < th dose dependent rect. 16 1
169 441.14 temperature 30 1440 > th dose dependent sin 14 NA
177 441.39 humidity 70 720 > th dose independent sin 12 NA
224 442.42 temperature 25 1440 > th dose dependent rect. 6 17
233 442.59 temperature 25 720 > th dose dependent rect. 17 6
237 442.72 temperature 30 1440 < th dose independent sin 13 NA
248 442.90 humidity 70 1440 > th dose independent sin 14 NA
268 443.01 temperature 30 1440 > th dose independent sin 13 NA
349 443.93 temperature 30 1440 > th dose independent rect. 15 4
381 444.17 humidity 70 1440 < th dose independent rect. 15 16
385 444.23 humidity 70 1440 < th dose independent rect. 15 5
422 444.35 temperature 30 1440 < th dose independent rect. 14 17
423 444.37 temperature 30 1440 < th dose independent rect. 14 14
461 444.57 temperature 30 1440 < th dose independent rect. 14 11
483 444.69 temperature 30 1440 < th dose independent rect. 14 6
547 445.15 radiation 20 1440 > th dose independent rect. 16 15
555 445.20 temperature 30 1440 < th dose independent rect. 14 22
556 445.23 temperature 25 1440 > th dose dependent no NA NA
562 445.31 temperature 25 1440 > th dose dependent rect. 20 23
593 445.69 temperature 30 1440 < th dose independent rect. 14 20
594 445.69 radiation 20 14400 > th dose dependent rect. 16 15
595 445.75 humidity 70 720 > th dose independent rect. 15 11
605 445.94 radiation 20 1440 > th dose dependent rect. 16 16
704 446.02 humidity 50 1440 > th dose dependent rect. 11 12
707 446.04 humidity 50 720 > th dose dependent rect. 16 9
729 446.62 temperature 30 1440 < th dose independent rect. 9 22
731 446.66 temperature 30 1440 < th dose independent rect. 9 19
754 446.78 temperature 30 1440 < th dose independent rect. 9 16
756 446.78 radiation 20 14400 > th dose dependent rect. 16 2
773 446.83 humidity 50 1440 > th dose dependent rect. 15 6
775 446.86 temperature 30 1440 < th dose independent rect. 9 10
778 446.87 temperature 30 1440 < th dose independent rect. 9 13
787 446.97 humidity 70 1440 < th dose independent rect. 18 13
789 447.02 temperature 30 1440 > th dose independent rect. 14 22
792 447.04 humidity 50 1440 > th dose dependent rect. 13 10
795 447.06 humidity 70 1440 < th dose independent rect. 18 2
832 447.40 temperature 30 1440 > th dose independent rect. 14 20
839 447.53 temperature 30 1440 < th dose independent rect. 17 23
891 448.10 humidity 50 1440 > th dose dependent sin 18 NA
904 448.22 wind 3 43200 > th dose dependent rect. 11 2
933 448.54 humidity 70 1440 > th dose independent rect. 14 13
935 448.56 humidity 70 14400 > th dose independent rect. 19 12
943 448.66 temperature 30 1440 > th dose independent rect. 9 10
952 448.66 humidity 70 1440 > th dose independent rect. 14 17
961 448.74 temperature 30 1440 < th dose independent rect. 24 19
963 448.74 temperature 30 1440 < th dose independent rect. 6 22
985 448.76 humidity 70 1440 > th dose independent rect. 14 6
994 448.77 temperature 30 1440 < th dose independent rect. 2 23
997 448.78 temperature 30 1440 < th dose independent no NA NA