Os09g0533600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 induced kinase 1.
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Os09g0533600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 induced kinase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.29 | 0.668 | 6.96 | 1.01 | 1.52 | 1.5 | -0.776 | 2.43 | 0.545 | 6.79 | 1.019 | 4324 | -- | -- |
| 203.64 | 0.665 | 6.99 | 0.912 | 1.42 | 1.49 | -0.733 | -- | 0.539 | 6.75 | 1.788 | 8676 | -- | -- |
| 203.76 | 0.665 | 6.96 | 0.994 | 1.52 | 1.51 | -- | 2.42 | 0.545 | 6.72 | 1.016 | 4332 | -- | -- |
| 200.65 | 0.66 | 7.03 | 0.458 | 1.91 | 1.65 | -- | -- | 0.387 | 6.67 | 1.431 | 10928 | -- | -- |
| 323.36 | 0.838 | 6.96 | 1.05 | -- | 1.62 | -- | 2.66 | 0.599 | -- | 1.02 | 4353 | -- | -- |
| 244.28 | 0.733 | 6.95 | 0.81 | 1.55 | -- | -0.7 | -- | 0.724 | 6.74 | -- | -- | -- | -- |
| 245.52 | 0.734 | 6.95 | 0.798 | 1.55 | -- | -- | -- | 0.726 | 6.72 | -- | -- | -- | -- |
| 332 | 0.849 | 7.03 | 0.102 | -- | 1.65 | -- | -- | 0.382 | -- | 1.47 | 24521 | -- | -- |
| 198.2 | 0.656 | 7.04 | -- | 1.89 | 1.77 | -- | -- | 0.289 | 6.94 | 1.43 | 13920 | -- | -- |
| 370.32 | 0.899 | 6.98 | 0.833 | -- | -- | -- | -- | 0.756 | -- | -- | -- | -- | -- |
| 262.31 | 0.758 | 6.97 | -- | 1.56 | -- | -- | -- | 0.637 | 6.69 | -- | -- | -- | -- |
| 324.22 | 0.839 | 7.04 | -- | -- | 1.54 | -- | -- | 0.179 | -- | 1.177 | 24528 | -- | -- |
| 388.65 | 0.92 | 7 | -- | -- | -- | -- | -- | 0.664 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.96 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 4 | 191.27 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 11 | 191.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 13 | 191.95 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 17 | 192.31 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 27 | 192.32 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 37 | 192.36 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 18 |
| 38 | 192.37 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 45 | 192.41 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 49 | 192.41 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 64 | 192.46 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 90 | 192.86 | radiation | 1.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 124 | 192.94 | radiation | 1.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 125 | 192.94 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 256 | 193.48 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 319 | 194.14 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 320 | 194.21 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 338 | 194.43 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 341 | 194.46 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 343 | 194.47 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 412 | 194.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 414 | 194.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 425 | 194.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 428 | 194.70 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 435 | 194.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 454 | 194.84 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 460 | 194.91 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 462 | 194.91 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 474 | 194.95 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 486 | 195.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 498 | 195.09 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 499 | 195.10 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 500 | 195.10 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 505 | 195.11 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 514 | 195.11 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 518 | 195.12 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 523 | 195.12 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 558 | 195.19 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 568 | 195.21 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 586 | 195.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 587 | 195.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 632 | 195.41 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 687 | 195.62 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 720 | 195.91 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 723 | 195.94 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 727 | 195.96 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 731 | 195.97 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 732 | 195.97 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 19 |
| 784 | 196.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 797 | 196.34 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 803 | 196.36 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 853 | 196.58 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 859 | 196.59 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 18 |
| 860 | 196.59 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 21 |
| 871 | 196.70 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 894 | 196.77 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 898 | 196.78 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 929 | 196.86 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 3 | NA |
| 931 | 196.86 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 933 | 196.86 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 22 |
| 949 | 196.90 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 961 | 196.92 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 963 | 196.93 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 21 |
| 969 | 196.94 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |