Os09g0533200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-1,3-glucanase precursor (EC 3.2.1.39).
FiT-DB / Search/ Help/ Sample detail
|
Os09g0533200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Beta-1,3-glucanase precursor (EC 3.2.1.39).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.39 | 0.65 | 3.94 | -0.358 | 0.878 | -1.01 | -1.09 | 0.511 | -0.256 | 8.12 | 20.2 | 1065 | -- | -- |
| 191.98 | 0.645 | 3.95 | -0.437 | 0.871 | -1.09 | -1.18 | -- | -0.27 | 8.15 | 20.22 | 1067 | -- | -- |
| 194.64 | 0.65 | 3.93 | -0.354 | 0.878 | -0.974 | -- | 0.766 | -0.25 | 7.87 | 20.3 | 1030 | -- | -- |
| 195.93 | 0.652 | 3.95 | -0.475 | 0.882 | -1.09 | -- | -- | -0.273 | 7.87 | 20.24 | 1067 | -- | -- |
| 231.81 | 0.709 | 3.94 | -0.253 | -- | -0.996 | -- | 1.08 | -0.174 | -- | 20.91 | 767 | -- | -- |
| 219.91 | 0.695 | 4 | -0.866 | 0.93 | -- | -1.21 | -- | -0.504 | 8.6 | -- | -- | -- | -- |
| 224.43 | 0.702 | 4 | -0.908 | 0.941 | -- | -- | -- | -0.506 | 8.33 | -- | -- | -- | -- |
| 234.47 | 0.713 | 3.97 | -0.443 | -- | -1.22 | -- | -- | -0.248 | -- | 20.02 | 809 | -- | -- |
| 201.64 | 0.661 | 3.95 | -- | 0.89 | -1.11 | -- | -- | -0.234 | 7.93 | 20 | 1077 | -- | -- |
| 273.61 | 0.773 | 4.03 | -0.902 | -- | -- | -- | -- | -0.496 | -- | -- | -- | -- | -- |
| 246.14 | 0.734 | 3.98 | -- | 0.937 | -- | -- | -- | -0.405 | 8.4 | -- | -- | -- | -- |
| 237.53 | 0.718 | 3.96 | -- | -- | -1.5 | -- | -- | -0.187 | -- | 19.6 | 850 | -- | -- |
| 295.06 | 0.802 | 4 | -- | -- | -- | -- | -- | -0.396 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.35 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 2 | 185.04 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 8 | 188.14 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 18 |
| 12 | 188.81 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 17 |
| 15 | 188.91 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 23 | 189.22 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 29 | 189.44 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 36 | 189.72 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 42 | 189.84 | temperature | 20.0 | 720 | < th | dose independent | sin | 6 | NA |
| 66 | 190.29 | temperature | 20.0 | 720 | > th | dose independent | sin | 5 | NA |
| 74 | 190.41 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 77 | 190.46 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 80 | 190.52 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 12 |
| 82 | 190.55 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 114 | 190.83 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 118 | 190.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 12 |
| 149 | 191.29 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 156 | 191.37 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 166 | 191.48 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 8 |
| 169 | 191.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 205 | 191.72 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 2 | 15 |
| 250 | 191.98 | temperature | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 285 | 192.17 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 287 | 192.18 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 314 | 192.32 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 325 | 192.37 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 335 | 192.41 | temperature | 25.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 341 | 192.44 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 400 | 192.70 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 445 | 192.91 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 486 | 193.03 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 533 | 193.22 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 23 |
| 585 | 193.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 22 |
| 651 | 193.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 653 | 193.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 666 | 193.74 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 691 | 193.84 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 730 | 193.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 736 | 193.99 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 749 | 194.04 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 755 | 194.06 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 23 |
| 777 | 194.14 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 782 | 194.15 | temperature | 10.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 800 | 194.21 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 808 | 194.23 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 826 | 194.27 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 23 |
| 827 | 194.27 | temperature | 20.0 | 720 | < th | dose independent | rect. | 8 | 23 |
| 858 | 194.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 869 | 194.38 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 23 |
| 926 | 194.52 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 931 | 194.54 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 932 | 194.54 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 971 | 194.65 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 976 | 194.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 7 |