Os09g0531100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0531100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.09 | 0.346 | 11.8 | -2.6 | 0.564 | 0.502 | 0.428 | 2.54 | -0.991 | 19.6 | 30.33 | 126 | -- | -- |
| 60.1 | 0.361 | 11.8 | -2.61 | 0.554 | 0.228 | 0.0841 | -- | -0.977 | 19.7 | -0.06281 | 166 | -- | -- |
| 54.54 | 0.344 | 11.8 | -2.61 | 0.563 | 0.474 | -- | 2.43 | -0.99 | 19.4 | 31.11 | 127 | -- | -- |
| 60.12 | 0.361 | 11.8 | -2.6 | 0.562 | 0.234 | -- | -- | -0.977 | 19.7 | -3.322 | 167 | -- | -- |
| 69.42 | 0.388 | 11.8 | -2.57 | -- | 0.398 | -- | 2.37 | -0.997 | -- | 33.03 | 356 | -- | -- |
| 60.71 | 0.365 | 11.8 | -2.59 | 0.57 | -- | 0.202 | -- | -0.966 | 18.7 | -- | -- | -- | -- |
| 60.81 | 0.365 | 11.8 | -2.59 | 0.57 | -- | -- | -- | -0.966 | 18.7 | -- | -- | -- | -- |
| 66.39 | 0.379 | 11.8 | -2.64 | -- | 0.559 | -- | -- | -1.03 | -- | -15.82 | 787 | -- | -- |
| 233.47 | 0.712 | 11.7 | -- | 0.589 | 0.634 | -- | -- | -0.675 | 19.2 | 48.52 | 173 | -- | -- |
| 77.82 | 0.412 | 11.8 | -2.61 | -- | -- | -- | -- | -0.977 | -- | -- | -- | -- | -- |
| 237.92 | 0.722 | 11.7 | -- | 0.603 | -- | -- | -- | -0.677 | 18.5 | -- | -- | -- | -- |
| 232.55 | 0.71 | 11.7 | -- | -- | 0.998 | -- | -- | -0.693 | -- | -557.6 | 47520 | -- | -- |
| 256.84 | 0.748 | 11.7 | -- | -- | -- | -- | -- | -0.688 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.04 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 2 | 52.04 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 17 |
| 4 | 52.23 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 6 | 52.24 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 8 | 52.28 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 11 | 52.38 | radiation | 30 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 32 | 52.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 11 |
| 33 | 52.51 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 13 |
| 34 | 52.52 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 9 |
| 47 | 52.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 77 | 52.79 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 82 | 52.83 | radiation | 30 | 270 | > th | dose dependent | sin | 10 | NA |
| 212 | 53.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 221 | 53.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 322 | 53.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 350 | 53.66 | temperature | 30 | 30 | < th | dose dependent | sin | 0 | NA |
| 351 | 53.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 352 | 53.66 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 10 | 11 |
| 359 | 53.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 380 | 53.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 2 |
| 395 | 53.78 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 399 | 53.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 409 | 53.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 434 | 53.90 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 3 |
| 462 | 53.93 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 583 | 54.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 8 |
| 613 | 54.19 | radiation | 40 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 614 | 54.20 | radiation | 30 | 270 | < th | dose independent | sin | 7 | NA |
| 619 | 54.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 781 | 54.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 784 | 54.40 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 787 | 54.41 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 7 |
| 794 | 54.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 795 | 54.42 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 796 | 54.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 938 | 54.59 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 13 |
| 984 | 54.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 2 |