Os09g0530500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0530500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.09 | 0.342 | 10.7 | 1.59 | 0.41 | -0.63 | -0.176 | 2.79 | 0.319 | 16.4 | 14.62 | 1643 | -- | -- |
| 58.89 | 0.357 | 10.7 | 1.28 | 0.328 | -0.665 | -0.173 | -- | 0.256 | 16.5 | 11.84 | 10882 | -- | -- |
| 52.93 | 0.339 | 10.7 | 1.69 | 0.404 | -0.56 | -- | 2.67 | 0.352 | 16.4 | 18.23 | 1587 | -- | -- |
| 57.61 | 0.353 | 10.7 | 1.12 | 0.376 | -0.71 | -- | -- | 0.194 | 16.5 | 12.01 | 5614 | -- | -- |
| 60.83 | 0.363 | 10.7 | 1.61 | -- | -0.617 | -- | 2.39 | 0.321 | -- | 14.82 | 2619 | -- | -- |
| 65.65 | 0.38 | 10.8 | 0.775 | 0.4 | -- | -0.174 | -- | 0.0438 | 16.4 | -- | -- | -- | -- |
| 65.73 | 0.38 | 10.8 | 0.773 | 0.398 | -- | -- | -- | 0.0428 | 16.3 | -- | -- | -- | -- |
| 64.86 | 0.375 | 10.7 | 1.12 | -- | -0.752 | -- | -- | 0.189 | -- | 11.53 | 5534 | -- | -- |
| 80.12 | 0.419 | 10.8 | -- | 0.473 | -0.36 | -- | -- | -0.000664 | 15.9 | 12.01 | 5614 | -- | -- |
| 74.26 | 0.403 | 10.8 | 0.758 | -- | -- | -- | -- | 0.0323 | -- | -- | -- | -- | -- |
| 81.49 | 0.422 | 10.8 | -- | 0.384 | -- | -- | -- | -0.0433 | 16.4 | -- | -- | -- | -- |
| 87.7 | 0.436 | 10.8 | -- | -- | -0.219 | -- | -- | -0.0108 | -- | 21.1 | 1213 | -- | -- |
| 89.4 | 0.441 | 10.8 | -- | -- | -- | -- | -- | -0.0518 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.44 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 2 | 50.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 3 | 50.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 7 | 50.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 14 | 50.88 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 15 | 50.92 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 16 | 50.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 20 | 50.97 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 22 | 50.97 | wind | 9 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 25 | 50.99 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 28 | 51.02 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 29 | 51.03 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 30 | 51.03 | radiation | 20 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 31 | 51.03 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 34 | 51.04 | temperature | 15 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 46 | 51.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 47 | 51.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 60 | 51.13 | radiation | 10 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 72 | 51.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 74 | 51.14 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 75 | 51.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 84 | 51.16 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 85 | 51.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 91 | 51.16 | radiation | 10 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 115 | 51.18 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 164 | 51.23 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 176 | 51.24 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 181 | 51.24 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 218 | 51.26 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 232 | 51.27 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 243 | 51.29 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 244 | 51.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 255 | 51.30 | temperature | 15 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 257 | 51.30 | temperature | 15 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 258 | 51.30 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 259 | 51.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 261 | 51.30 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 264 | 51.30 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 265 | 51.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 289 | 51.32 | temperature | 15 | 43200 | < th | dose independent | sin | 1 | NA |
| 342 | 51.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 388 | 51.37 | temperature | 15 | 43200 | > th | dose independent | sin | 0 | NA |
| 393 | 51.37 | temperature | 15 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 440 | 51.39 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 443 | 51.39 | temperature | 15 | 43200 | < th | dose independent | rect. | 8 | 10 |
| 452 | 51.39 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 20 |
| 467 | 51.40 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 468 | 51.40 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 473 | 51.40 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 483 | 51.40 | temperature | 15 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 498 | 51.41 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 499 | 51.41 | temperature | 15 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 503 | 51.41 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 523 | 51.41 | temperature | 15 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 545 | 51.41 | temperature | 15 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 550 | 51.41 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 565 | 51.42 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 605 | 51.42 | temperature | 15 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 613 | 51.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 623 | 51.43 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 635 | 51.43 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 639 | 51.43 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 649 | 51.43 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 734 | 51.45 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 792 | 51.46 | temperature | 15 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 798 | 51.46 | temperature | 15 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 816 | 51.46 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 20 |
| 841 | 51.47 | temperature | 15 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 862 | 51.47 | temperature | 15 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 880 | 51.48 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 917 | 51.48 | temperature | 15 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 944 | 51.48 | temperature | 15 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 985 | 51.49 | temperature | 15 | 43200 | > th | dose independent | rect. | 15 | 16 |