Os09g0530200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4).
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Os09g0530200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.54 | 0.509 | 5.83 | 0.539 | 1.01 | 1.25 | -0.211 | -0.394 | -0.0473 | 13.8 | 24.89 | 766 | -- | -- |
| 117.77 | 0.505 | 5.84 | 0.509 | 1.01 | 1.3 | -0.274 | -- | -0.0596 | 13.8 | 24.77 | 772 | -- | -- |
| 117.71 | 0.505 | 5.83 | 0.541 | 1.01 | 1.25 | -- | -0.43 | -0.0487 | 13.8 | 24.9 | 767 | -- | -- |
| 118.02 | 0.506 | 5.84 | 0.472 | 1 | 1.3 | -- | -- | -0.0615 | 13.8 | 24.77 | 775 | -- | -- |
| 171.75 | 0.61 | 5.81 | 0.616 | -- | 1.73 | -- | -0.259 | 0.0594 | -- | 26.68 | 959 | -- | -- |
| 142.11 | 0.559 | 5.89 | 0.112 | 1.13 | -- | -0.334 | -- | -0.326 | 13.3 | -- | -- | -- | -- |
| 142.57 | 0.559 | 5.89 | 0.101 | 1.13 | -- | -- | -- | -0.328 | 13.3 | -- | -- | -- | -- |
| 171.92 | 0.611 | 5.82 | 0.581 | -- | 1.76 | -- | -- | 0.0471 | -- | 26.64 | 960 | -- | -- |
| 123.02 | 0.517 | 5.85 | -- | 1.02 | 1.08 | -- | -- | -0.15 | 13.7 | 24.8 | 762 | -- | -- |
| 221.11 | 0.695 | 5.91 | 0.0567 | -- | -- | -- | -- | -0.352 | -- | -- | -- | -- | -- |
| 142.83 | 0.559 | 5.9 | -- | 1.13 | -- | -- | -- | -0.34 | 13.3 | -- | -- | -- | -- |
| 179.55 | 0.624 | 5.84 | -- | -- | 1.51 | -- | -- | -0.0682 | -- | 26.63 | 951 | -- | -- |
| 221.2 | 0.694 | 5.91 | -- | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 2 | 110.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 9 | 111.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 12 | 111.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 21 | 111.95 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 29 | 112.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 44 | 112.49 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 49 | 112.53 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 57 | 112.65 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 65 | 112.78 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 70 | 112.86 | humidity | 80 | 43200 | > th | dose dependent | rect. | 6 | 5 |
| 90 | 112.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 95 | 112.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 120 | 113.19 | humidity | 90 | 43200 | < th | dose independent | sin | 2 | NA |
| 125 | 113.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 131 | 113.23 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 141 | 113.30 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 147 | 113.34 | humidity | 90 | 43200 | > th | dose independent | sin | 1 | NA |
| 152 | 113.36 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 195 | 113.54 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 233 | 113.71 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 271 | 113.88 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 290 | 113.95 | humidity | 80 | 43200 | > th | dose dependent | sin | 0 | NA |
| 304 | 114.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 318 | 114.05 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 372 | 114.18 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 377 | 114.19 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 383 | 114.20 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 411 | 114.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 414 | 114.27 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 441 | 114.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 452 | 114.37 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 461 | 114.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 469 | 114.42 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 486 | 114.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 489 | 114.47 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 512 | 114.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 524 | 114.53 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 530 | 114.54 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 536 | 114.55 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 537 | 114.55 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 12 |
| 569 | 114.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 595 | 114.67 | radiation | 1 | 43200 | < th | dose independent | sin | 12 | NA |
| 606 | 114.68 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 621 | 114.71 | radiation | 1 | 43200 | > th | dose independent | sin | 12 | NA |
| 637 | 114.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 638 | 114.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 640 | 114.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 11 |
| 683 | 114.76 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 722 | 114.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 731 | 114.80 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 20 |
| 780 | 114.86 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 788 | 114.87 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 797 | 114.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 18 |
| 826 | 114.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 828 | 114.92 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 833 | 114.93 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 835 | 114.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 858 | 114.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 861 | 114.95 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 862 | 114.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 945 | 115.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 949 | 115.03 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 961 | 115.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 972 | 115.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 993 | 115.05 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 997 | 115.05 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 17 |