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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0529300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.13 (0.0548) R2 : 0.293
β1 : -0.364 (0.21) R2dD : 0.00532 R2D : 0.00491
β2 : 0.995 (0.132) R2dC : 0.0924 R2C : 0.0349
β3 : 1.38 (0.126) R2dE : 0.194 R2E : 0.127
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.29 (0.652) R2dD*E : 0.0448 R2D*E : 0.0572
γ1 : -0.28 (0.118) R2dN8 : 0.0126 R2N8 : -0.00075
σ : 1.02
deviance : 476.32
__
_____
C
peak time of C : 23.4
E
wheather : temperature
threshold : 19.9
memory length : 80
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.16
open length of G : 6.17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
465.21 1.01 4.14 -0.457 0.949 1.33 -1.71 2.98 -0.301 23.7 19.9 91 3.03 6.03
482.78 1.02 4.11 -0.431 0.968 1.38 -2.13 -- -0.173 23 16.4 92 2.95 6.28
476.32 1.02 4.13 -0.364 0.995 1.38 -- 3.29 -0.28 23.4 19.9 80 3.16 6.17
498.97 1.04 4.15 -0.679 1.06 1.49 -- -- -0.3 22.5 15.78 72 3.12 6.24
532.51 1.07 4.14 -0.24 -- 1.31 -- 3.62 -0.281 -- 19.9 69 3.22 6
561.43 1.11 4.1 -0.635 1.33 -- -0.763 -- -0.234 3.11 -- -- -- --
562.98 1.11 4.1 -0.619 1.34 -- -- -- -0.23 3.34 -- -- -- --
545.06 1.09 4.14 -0.76 -- 1.29 -- -- -0.399 -- 22.5 52 3.15 6.2
511.1 1.05 4.13 -- 1.05 1.47 -- -- -0.224 22.5 14.82 69 3.15 6.27
663.7 1.2 4.1 -0.563 -- -- -- -- -0.195 -- -- -- -- --
573.09 1.12 4.08 -- 1.32 -- -- -- -0.161 3.34 -- -- -- --
559.3 1.11 4.12 -- -- 1.25 -- -- -0.307 -- 22.4 50 3.16 6.12
672.06 1.21 4.08 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 466.23 temperature 20.0 90 > th dose independent rect. 3 6
2 470.10 temperature 10.0 90 > th dose dependent rect. 3 6
4 473.53 wind 9.0 90 < th dose dependent rect. 3 6
7 474.58 precipitation 0.1 90 < th dose independent rect. 3 6
8 474.58 precipitation 0.1 90 < th dose dependent rect. 3 6
10 475.31 wind 7.0 90 < th dose independent rect. 3 6
12 475.42 temperature 10.0 90 > th dose independent rect. 3 6
14 475.42 humidity 50.0 90 > th dose independent rect. 3 6
15 475.42 atmosphere 995.0 90 > th dose independent rect. 3 6
16 475.42 atmosphere 1015.0 90 < th dose independent rect. 3 6
17 475.42 temperature 10.0 90 > th dose independent rect. 9 18
20 475.75 radiation 40.0 90 < th dose independent rect. 3 6
21 476.03 temperature 10.0 270 > th dose dependent rect. 1 7
25 476.57 atmosphere 995.0 90 > th dose independent rect. 9 18
29 477.18 wind 9.0 90 < th dose independent rect. 9 18
34 477.54 humidity 80.0 270 > th dose independent rect. 1 6
38 478.39 temperature 30.0 90 < th dose independent rect. 3 6
45 479.44 precipitation 0.1 90 < th dose independent rect. 9 18
46 479.44 precipitation 0.1 90 < th dose dependent rect. 9 18
47 479.59 humidity 50.0 90 > th dose dependent rect. 3 6
55 480.70 wind 9.0 270 < th dose dependent rect. 13 18
58 480.88 wind 7.0 270 < th dose independent rect. 13 18
65 481.42 temperature 20.0 90 > th dose independent rect. 3 16
71 482.13 wind 5.0 10 < th dose independent rect. 3 8
76 482.36 wind 5.0 270 < th dose independent rect. 1 6
84 482.71 wind 9.0 270 < th dose dependent rect. 1 7
93 483.07 radiation 30.0 270 < th dose independent rect. 1 7
101 483.31 humidity 50.0 270 > th dose dependent rect. 1 6
109 483.44 temperature 10.0 270 > th dose independent rect. 1 6
111 483.44 temperature 30.0 270 < th dose independent rect. 1 6
112 483.44 humidity 50.0 270 > th dose independent rect. 1 6
114 483.44 atmosphere 995.0 270 > th dose independent rect. 1 6
115 483.44 atmosphere 1015.0 270 < th dose independent rect. 1 6
117 483.44 temperature 10.0 270 > th dose independent rect. 7 18
119 483.48 atmosphere 995.0 270 > th dose independent rect. 7 18
136 483.97 precipitation 0.1 270 < th dose independent rect. 1 6
137 483.97 precipitation 0.1 270 < th dose dependent rect. 1 6
139 483.98 precipitation 0.1 10 < th dose independent rect. 3 7
140 483.98 precipitation 0.1 10 < th dose dependent rect. 3 7
154 484.17 atmosphere 995.0 90 > th dose dependent rect. 9 18
167 484.46 atmosphere 1015.0 90 < th dose dependent rect. 3 6
172 484.50 humidity 80.0 270 > th dose independent rect. 3 2
176 484.88 precipitation 0.1 90 < th dose independent rect. 3 16
177 484.88 precipitation 0.1 90 < th dose dependent rect. 3 16
178 484.93 temperature 30.0 270 < th dose independent rect. 7 6
190 485.18 precipitation 0.1 270 < th dose independent rect. 7 18
191 485.18 precipitation 0.1 270 < th dose dependent rect. 7 18
210 485.75 wind 9.0 270 < th dose independent rect. 7 18
211 485.78 precipitation 0.1 10 < th dose independent rect. 10 17
212 485.78 precipitation 0.1 10 < th dose dependent rect. 10 17
214 485.84 temperature 10.0 270 > th dose dependent rect. 3 2
215 485.87 radiation 40.0 90 < th dose dependent rect. 3 6
218 485.88 temperature 10.0 10 > th dose independent rect. 3 7
221 485.88 atmosphere 995.0 10 > th dose independent rect. 3 7
222 485.88 atmosphere 1015.0 10 < th dose independent rect. 3 7
223 485.88 temperature 10.0 10 > th dose independent rect. 10 17
231 486.00 radiation 40.0 270 < th dose dependent rect. 1 6
238 486.05 atmosphere 995.0 10 > th dose independent rect. 10 17
280 486.75 wind 9.0 90 < th dose independent rect. 3 16
283 486.87 wind 9.0 10 < th dose independent rect. 10 17
295 487.10 wind 1.0 270 > th dose independent rect. 3 1
313 487.28 radiation 1.0 90 < th dose dependent rect. 19 8
315 487.29 temperature 10.0 90 > th dose independent rect. 19 8
316 487.29 temperature 30.0 90 < th dose independent rect. 19 8
317 487.29 humidity 50.0 90 > th dose independent rect. 19 8
319 487.29 atmosphere 995.0 90 > th dose independent rect. 19 8
320 487.29 radiation 1.0 90 < th dose independent rect. 19 8
326 487.29 temperature 10.0 90 > th dose independent rect. 3 16
327 487.29 atmosphere 1015.0 90 < th dose independent rect. 3 16
339 487.38 temperature 10.0 270 > th dose independent rect. 7 6
340 487.38 atmosphere 995.0 270 > th dose independent rect. 7 6
341 487.38 atmosphere 1015.0 270 < th dose independent rect. 7 6
342 487.38 temperature 10.0 270 > th dose independent rect. 13 18
370 487.47 precipitation 0.1 270 < th dose independent rect. 7 6
372 487.47 precipitation 0.1 270 < th dose dependent rect. 7 6
373 487.49 wind 9.0 90 < th dose independent rect. 19 8
377 487.62 wind 1.0 270 > th dose independent rect. 6 7
392 487.91 wind 9.0 270 < th dose independent rect. 7 6
438 488.34 precipitation 0.1 90 < th dose independent rect. 19 8
439 488.34 precipitation 0.1 90 < th dose dependent rect. 19 8
443 488.43 atmosphere 1015.0 270 < th dose independent rect. 13 18
452 488.57 precipitation 0.1 270 < th dose independent rect. 13 18
453 488.57 precipitation 0.1 270 < th dose dependent rect. 13 18
464 488.72 temperature 20.0 90 > th dose independent rect. 3 20
524 489.36 atmosphere 1015.0 270 < th dose dependent rect. 1 6
539 489.46 radiation 40.0 270 < th dose independent rect. 13 18
547 489.61 radiation 1.0 270 > th dose independent rect. 7 6
551 489.68 humidity 50.0 90 > th dose dependent rect. 19 8
598 490.20 humidity 50.0 270 > th dose dependent rect. 3 2
603 490.24 atmosphere 1015.0 90 < th dose independent rect. 9 18
617 490.49 radiation 1.0 270 < th dose dependent rect. 3 2
639 490.64 wind 7.0 270 < th dose independent rect. 3 2
672 490.97 radiation 1.0 270 < th dose independent rect. 3 2
678 490.98 temperature 10.0 270 > th dose independent rect. 3 2
680 490.98 temperature 30.0 270 < th dose independent rect. 3 2
681 490.98 humidity 50.0 270 > th dose independent rect. 3 2
684 490.98 atmosphere 995.0 270 > th dose independent rect. 3 2
685 490.98 atmosphere 1010.0 270 < th dose independent rect. 3 2
690 490.98 temperature 10.0 270 > th dose independent rect. 5 22
699 491.18 wind 1.0 270 > th dose independent rect. 7 18
726 491.45 wind 1.0 270 > th dose independent rect. 13 16
767 491.93 temperature 30.0 90 < th dose dependent rect. 20 7
806 492.28 humidity 50.0 270 > th dose independent rect. 7 6
816 492.35 temperature 10.0 270 > th dose dependent rect. 13 18
817 492.36 atmosphere 995.0 270 > th dose independent rect. 17 9
820 492.40 radiation 10.0 270 < th dose independent rect. 17 9
868 492.75 wind 9.0 90 < th dose dependent rect. 3 16
873 492.82 temperature 10.0 1440 > th dose independent rect. 4 8
876 492.82 atmosphere 995.0 1440 > th dose independent rect. 4 8
877 492.82 temperature 10.0 1440 > th dose independent rect. 12 16
881 492.86 precipitation 0.1 270 < th dose independent rect. 3 2
882 492.86 precipitation 0.1 270 < th dose dependent rect. 3 2
888 492.91 temperature 30.0 90 < th dose independent rect. 9 18
889 492.91 radiation 30.0 270 < th dose dependent rect. 17 9
918 493.24 humidity 50.0 270 > th dose independent rect. 17 9
923 493.28 wind 1.0 270 > th dose independent rect. 1 6
926 493.34 temperature 10.0 1440 > th dose independent rect. 4 6
929 493.34 atmosphere 995.0 1440 > th dose independent rect. 4 6
930 493.34 atmosphere 1015.0 1440 < th dose independent rect. 4 6
931 493.34 temperature 10.0 1440 > th dose independent rect. 10 18
934 493.35 wind 9.0 270 < th dose dependent rect. 3 2
945 493.47 temperature 10.0 270 > th dose independent rect. 17 9
973 493.73 atmosphere 995.0 90 > th dose dependent rect. 19 8