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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0528000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Kinesin, motor region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.1 (0.0345) R2 : 0.765
β1 : -2.03 (0.126) R2dD : 0.141 R2D : 0.141
β2 : 2.15 (0.0894) R2dC : 0.309 R2C : 0.178
β3 : -2.24 (0.0777) R2dE : 0.438 R2E : 0.325
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.274 (0.0735) R2dN8 : 0.00982 R2N8 : -0.013
σ : 0.644
deviance : 191.04
__
_____
C
peak time of C : 7.68
E
wheather : humidity
threshold : 79
memory length : 115
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22.7
open length of G : 6.22

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.58 0.652 6.09 -2.03 2.15 -2.18 0.148 -0.224 -0.256 7.8 79.82 106 22.9 6.13
191.49 0.644 6.1 -1.96 2.13 -2.22 0.224 -- -0.266 7.67 79 108 22.8 6.21
191.57 0.645 6.11 -1.95 2.15 -2.18 -- -0.113 -0.285 7.72 79 109 22.8 6.2
191.04 0.644 6.1 -2.03 2.15 -2.24 -- -- -0.274 7.68 79 115 22.7 6.22
377.56 0.905 6.11 -2.03 -- -1.8 -- 0.236 -0.073 -- 78.93 36 22.5 6.47
305.63 0.82 6.06 -2.03 2.5 -- -0.0546 -- -0.133 11.1 -- -- -- --
305.64 0.819 6.06 -2.03 2.5 -- -- -- -0.133 11.1 -- -- -- --
376.34 0.904 6.12 -2.07 -- -1.86 -- -- -0.142 -- 78.96 32 22.5 6.45
300.59 0.807 6.04 -- 2.11 -2.23 -- -- -0.0344 7.8 79.65 117 22.8 6.19
695.31 1.23 6.12 -2.09 -- -- -- -- -0.153 -- -- -- -- --
414.66 0.953 6.01 -- 2.52 -- -- -- 0.0936 11.2 -- -- -- --
455.97 0.995 6.12 -- -- -1.88 -- -- 0.182 -- 79 25 21.7 7.42
810.77 1.33 6.07 -- -- -- -- -- 0.0788 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.44 temperature 10.0 270 > th dose dependent rect. 21 7
2 199.91 humidity 80.0 90 > th dose independent rect. 23 6
5 205.81 temperature 10.0 90 > th dose dependent rect. 23 6
7 207.06 humidity 60.0 90 > th dose dependent rect. 23 6
14 209.78 temperature 20.0 270 > th dose independent rect. 9 19
16 211.38 temperature 20.0 270 > th dose independent rect. 21 7
19 212.49 temperature 20.0 90 > th dose independent rect. 23 6
21 212.61 humidity 50.0 270 > th dose dependent rect. 21 7
24 213.55 temperature 20.0 270 > th dose independent rect. 23 4
30 214.90 radiation 1.0 90 < th dose dependent sin 8 NA
34 215.66 radiation 1.0 30 < th dose dependent sin 6 NA
39 216.71 wind 9.0 270 < th dose dependent rect. 21 7
41 216.79 wind 9.0 90 < th dose dependent rect. 23 6
54 218.56 humidity 60.0 90 > th dose independent rect. 5 6
56 218.72 radiation 1.0 30 < th dose independent sin 6 NA
58 218.94 radiation 1.0 30 > th dose independent sin 6 NA
60 219.21 precipitation 0.1 270 < th dose independent rect. 4 17
61 219.21 precipitation 0.1 270 < th dose dependent rect. 4 17
66 219.53 wind 9.0 90 < th dose independent rect. 23 6
68 219.55 temperature 30.0 90 < th dose independent rect. 23 6
69 219.55 humidity 50.0 90 > th dose independent rect. 23 6
72 219.55 atmosphere 995.0 90 > th dose independent rect. 23 6
73 219.55 radiation 20.0 90 < th dose independent rect. 23 6
76 219.55 temperature 10.0 90 > th dose independent rect. 5 18
79 219.58 radiation 30.0 90 < th dose dependent rect. 23 6
81 219.59 radiation 1.0 90 < th dose independent rect. 23 6
90 219.98 temperature 10.0 90 > th dose dependent rect. 11 18
93 220.13 humidity 60.0 270 > th dose independent rect. 3 7
94 220.16 radiation 40.0 270 < th dose independent rect. 3 7
95 220.19 radiation 30.0 270 < th dose independent rect. 4 5
99 220.33 atmosphere 1015.0 90 < th dose independent rect. 5 18
105 220.51 precipitation 0.1 90 < th dose independent rect. 23 6
106 220.51 precipitation 0.1 90 < th dose dependent rect. 23 6
108 220.53 temperature 30.0 270 < th dose independent rect. 21 7
109 220.53 humidity 50.0 270 > th dose independent rect. 21 7
112 220.53 atmosphere 995.0 270 > th dose independent rect. 21 7
113 220.53 radiation 1.0 270 < th dose independent rect. 21 7
119 220.53 radiation 1.0 270 < th dose dependent rect. 21 7
124 220.67 wind 9.0 270 < th dose independent rect. 21 7
133 221.07 precipitation 0.1 270 < th dose independent rect. 21 7
134 221.07 precipitation 0.1 270 < th dose dependent rect. 21 7
137 221.40 wind 9.0 90 < th dose independent rect. 5 18
141 221.73 humidity 50.0 90 > th dose dependent rect. 5 6
152 222.28 wind 9.0 270 < th dose dependent rect. 9 19
159 222.59 precipitation 0.1 90 < th dose independent rect. 5 6
160 222.59 precipitation 0.1 90 < th dose dependent rect. 5 6
163 222.69 temperature 10.0 90 > th dose independent rect. 5 6
164 222.69 atmosphere 995.0 90 > th dose independent rect. 5 6
165 222.69 atmosphere 1015.0 90 < th dose independent rect. 5 6
169 222.76 wind 9.0 90 < th dose independent rect. 11 18
172 222.84 precipitation 0.1 270 < th dose independent rect. 3 7
173 222.84 precipitation 0.1 270 < th dose dependent rect. 3 7
174 222.85 wind 9.0 90 < th dose independent rect. 5 6
179 223.23 temperature 10.0 270 > th dose independent rect. 3 7
180 223.23 atmosphere 995.0 270 > th dose independent rect. 3 7
181 223.23 atmosphere 1015.0 270 < th dose independent rect. 3 7
183 223.24 wind 9.0 270 < th dose independent rect. 3 7
185 223.29 radiation 40.0 270 < th dose dependent rect. 4 5
187 223.31 radiation 30.0 270 < th dose independent rect. 17 15
215 224.15 temperature 10.0 270 > th dose independent rect. 9 19
218 224.19 wind 9.0 270 < th dose independent rect. 9 19
227 224.52 atmosphere 1010.0 90 < th dose independent rect. 23 6
238 224.95 wind 9.0 90 < th dose dependent rect. 11 18
246 225.18 temperature 30.0 270 < th dose independent rect. 4 5
253 225.40 radiation 1.0 90 < th dose dependent rect. 23 17
272 225.93 wind 9.0 270 < th dose independent rect. 23 15
279 226.08 precipitation 0.1 270 < th dose independent rect. 17 15
280 226.08 precipitation 0.1 270 < th dose dependent rect. 17 15
289 226.34 temperature 10.0 270 > th dose independent rect. 8 9
290 226.34 atmosphere 1015.0 270 < th dose independent rect. 8 9
291 226.34 temperature 10.0 270 > th dose independent rect. 17 15
292 226.36 wind 9.0 270 < th dose independent rect. 8 9
293 226.36 wind 9.0 270 < th dose independent rect. 17 15
294 226.40 temperature 10.0 270 > th dose independent rect. 14 9
295 226.40 temperature 10.0 270 > th dose independent rect. 23 15
296 226.40 atmosphere 995.0 270 > th dose independent rect. 23 15
298 226.43 atmosphere 1015.0 90 < th dose dependent rect. 23 6
307 226.78 wind 1.0 90 > th dose independent rect. 5 18
314 226.79 radiation 30.0 270 < th dose independent rect. 16 17
331 227.02 precipitation 0.1 270 < th dose independent rect. 10 17
333 227.02 precipitation 0.1 270 < th dose dependent rect. 10 17
363 227.59 radiation 40.0 270 < th dose independent rect. 14 9
368 227.67 wind 9.0 270 < th dose independent rect. 14 9
370 227.69 precipitation 0.1 270 < th dose independent rect. 14 9
371 227.69 precipitation 0.1 270 < th dose dependent rect. 14 9
374 227.73 atmosphere 995.0 90 > th dose independent rect. 11 18
376 227.77 humidity 50.0 270 > th dose independent rect. 17 15
379 227.80 atmosphere 995.0 90 > th dose independent rect. 5 18
380 227.81 precipitation 0.1 270 < th dose independent rect. 8 9
381 227.81 precipitation 0.1 270 < th dose dependent rect. 8 9
384 227.87 precipitation 0.1 270 < th dose independent rect. 23 15
385 227.87 precipitation 0.1 270 < th dose dependent rect. 23 15
392 228.03 precipitation 0.1 270 < th dose independent rect. 9 19
393 228.03 precipitation 0.1 270 < th dose dependent rect. 9 19
420 228.22 humidity 50.0 90 > th dose independent rect. 5 18
423 228.28 wind 1.0 270 > th dose independent rect. 14 9
449 228.82 atmosphere 995.0 270 > th dose independent rect. 17 15
454 228.96 radiation 1.0 90 < th dose independent rect. 23 17
505 229.89 atmosphere 995.0 270 > th dose independent rect. 9 19
519 230.13 temperature 10.0 270 > th dose dependent rect. 4 5
566 230.71 atmosphere 1015.0 270 < th dose independent rect. 23 15
571 230.78 wind 9.0 90 < th dose dependent rect. 5 6
575 231.02 atmosphere 995.0 270 > th dose independent rect. 8 9
577 231.07 precipitation 0.1 270 < th dose independent rect. 16 17
578 231.07 precipitation 0.1 270 < th dose dependent rect. 16 17
590 231.27 wind 9.0 270 < th dose independent rect. 9 7
625 231.69 radiation 40.0 270 < th dose dependent rect. 16 17
640 231.85 precipitation 0.1 270 < th dose independent rect. 9 7
641 231.85 precipitation 0.1 270 < th dose dependent rect. 9 7
643 231.86 temperature 10.0 270 > th dose independent rect. 9 7
644 231.86 atmosphere 1015.0 270 < th dose independent rect. 9 7
645 231.86 temperature 10.0 270 > th dose independent rect. 16 17
655 231.91 wind 1.0 90 > th dose independent rect. 5 6
657 231.96 wind 9.0 270 < th dose independent rect. 16 17
676 232.28 radiation 20.0 270 < th dose independent rect. 5 2
679 232.34 radiation 40.0 270 < th dose independent rect. 4 18
688 232.47 atmosphere 995.0 270 > th dose independent rect. 9 7
745 233.09 precipitation 0.1 270 < th dose independent rect. 5 2
746 233.09 precipitation 0.1 270 < th dose dependent rect. 5 2
747 233.10 radiation 40.0 270 < th dose dependent rect. 5 2
760 233.23 wind 7.0 270 < th dose independent rect. 5 2
762 233.23 temperature 10.0 270 > th dose independent rect. 5 2
764 233.23 temperature 30.0 270 < th dose independent rect. 5 2
765 233.23 humidity 50.0 270 > th dose independent rect. 5 2
767 233.23 atmosphere 995.0 270 > th dose independent rect. 5 2
768 233.23 atmosphere 1015.0 270 < th dose independent rect. 5 2
771 233.23 temperature 10.0 270 > th dose independent rect. 7 22
786 233.38 radiation 10.0 10 < th dose dependent rect. 23 7
804 233.55 wind 1.0 270 > th dose independent rect. 16 16
825 233.72 temperature 10.0 270 > th dose dependent rect. 5 2
848 234.06 radiation 40.0 270 < th dose independent rect. 3 20
850 234.08 wind 9.0 270 < th dose independent rect. 7 22
873 234.40 radiation 1.0 90 > th dose independent rect. 18 17
878 234.45 wind 9.0 10 < th dose independent rect. 12 17
889 234.57 radiation 40.0 270 < th dose dependent rect. 17 15
906 234.69 wind 9.0 10 < th dose independent rect. 5 7
907 234.71 precipitation 0.1 10 < th dose independent rect. 5 7
909 234.71 precipitation 0.1 10 < th dose dependent rect. 5 7
912 234.73 wind 9.0 270 < th dose dependent rect. 5 2
926 234.86 temperature 10.0 10 > th dose independent rect. 5 7
928 234.86 atmosphere 995.0 10 > th dose independent rect. 5 7
929 234.86 atmosphere 1015.0 10 < th dose independent rect. 5 7
938 234.95 atmosphere 1015.0 270 < th dose independent rect. 15 8