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Os09g0526600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Heat shock factor protein 3 (HSF 3) (Heat shock transcription factor 3) (HSTF 3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.6 (0.0446) R2 : 0.865
β1 : 0.515 (0.164) R2dD : 0.00318 R2D : -0.008
β2 : 5.16 (0.107) R2dC : 0.697 R2C : 0.733
β3 : -3.4 (0.182) R2dE : 0.105 R2E : 0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.34 (0.772) R2dD*E : 0.0102 R2D*E : 0.0102
γ1 : 0.381 (0.0951) R2dN8 : 0.00645 R2N8 : 0.00334
σ : 0.832
deviance : 319.08
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C
peak time of C : 10.8
E
wheather : radiation
threshold : 5.943
memory length : 79
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 19.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
318.36 0.838 9.6 0.506 5.16 -3.39 0.443 -4.44 0.383 10.8 6 79 19.6 --
338.88 0.857 9.59 0.551 5.19 -3.57 0.531 -- 0.402 10.6 5.161 97 20 --
319.08 0.832 9.6 0.515 5.16 -3.4 -- -4.34 0.381 10.8 5.943 79 19.7 --
339.83 0.859 9.58 0.566 5.19 -3.6 -- -- 0.396 10.6 5.168 97 20 --
541.61 1.08 9.71 0.697 -- -5.04 -- -0.818 0.416 -- 29.51 2 6.45 --
536.7 1.09 9.57 0.526 5.38 -- 0.921 -- 0.526 11.6 -- -- -- --
540.37 1.09 9.57 0.562 5.37 -- -- -- 0.529 11.6 -- -- -- --
534.26 1.08 9.69 0.548 -- -5.24 -- -- 0.498 -- 69.57 2 6.43 --
347.85 0.869 9.59 -- 5.17 -3.58 -- -- 0.341 10.6 4.485 101 19.9 --
2353.28 2.27 9.69 0.415 -- -- -- -- 0.469 -- -- -- -- --
548.7 1.1 9.58 -- 5.37 -- -- -- 0.467 11.6 -- -- -- --
540.2 1.09 9.7 -- -- -5.22 -- -- 0.431 -- 63.62 2 6.42 --
2357.82 2.27 9.7 -- -- -- -- -- 0.423 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 332.88 radiation 10.0 90 < th dose dependent rect. 3 12
2 332.93 radiation 10.0 90 < th dose dependent sin 2 NA
4 335.35 radiation 10.0 90 < th dose dependent rect. 3 16
17 346.47 radiation 1.0 90 < th dose independent rect. 3 16
23 348.70 radiation 1.0 90 < th dose independent sin 2 NA
24 349.01 radiation 1.0 90 > th dose independent sin 2 NA
25 349.64 temperature 10.0 10 > th dose dependent rect. 6 21
51 359.23 radiation 1.0 90 < th dose independent rect. 3 14
52 359.35 temperature 10.0 10 > th dose dependent rect. 6 10
65 361.70 humidity 80.0 10 > th dose dependent rect. 3 13
80 363.42 radiation 1.0 90 < th dose independent rect. 3 8
120 367.09 humidity 90.0 10 < th dose independent rect. 6 10
131 368.60 radiation 10.0 90 < th dose dependent rect. 23 23
135 368.80 radiation 20.0 30 < th dose dependent rect. 13 19
147 370.01 radiation 1.0 270 < th dose independent rect. 1 13
154 370.42 radiation 1.0 270 < th dose independent rect. 1 10
179 371.40 precipitation 0.1 30 < th dose independent rect. 3 3
180 371.40 precipitation 0.1 30 < th dose dependent rect. 3 3
184 371.52 wind 9.0 30 < th dose dependent rect. 3 3
218 373.52 radiation 30.0 90 < th dose dependent rect. 13 17
220 373.60 temperature 15.0 270 > th dose independent rect. 5 10
222 373.68 radiation 10.0 90 < th dose dependent rect. 9 23
224 373.74 wind 9.0 270 < th dose dependent rect. 5 10
235 374.27 radiation 10.0 90 < th dose dependent rect. 7 23
240 374.43 radiation 10.0 90 < th dose dependent rect. 1 22
246 374.53 radiation 10.0 90 < th dose dependent rect. 15 23
262 374.92 radiation 10.0 90 < th dose dependent no NA NA
277 375.21 temperature 25.0 90 < th dose independent rect. 2 7
311 375.80 wind 7.0 30 < th dose independent rect. 3 3
312 375.81 wind 9.0 270 < th dose independent rect. 1 4
313 375.82 temperature 10.0 270 > th dose independent rect. 1 4
315 375.82 temperature 30.0 270 < th dose independent rect. 1 4
316 375.82 humidity 50.0 270 > th dose independent rect. 1 4
319 375.82 atmosphere 995.0 270 > th dose independent rect. 1 4
320 375.82 atmosphere 1010.0 270 < th dose independent rect. 1 4
322 375.82 radiation 20.0 270 < th dose independent rect. 1 4
325 375.82 temperature 10.0 270 > th dose independent rect. 5 20
326 375.84 radiation 30.0 270 < th dose dependent rect. 1 4
331 375.94 radiation 1.0 270 < th dose independent rect. 1 4
338 376.12 radiation 10.0 90 < th dose dependent rect. 17 23
341 376.23 atmosphere 1015.0 1440 < th dose independent rect. 3 4
343 376.25 temperature 10.0 30 > th dose independent rect. 3 3
345 376.25 temperature 30.0 30 < th dose independent rect. 3 3
346 376.25 humidity 50.0 30 > th dose independent rect. 3 3
349 376.25 atmosphere 995.0 30 > th dose independent rect. 3 3
350 376.25 atmosphere 1010.0 30 < th dose independent rect. 3 3
352 376.25 radiation 20.0 30 < th dose independent rect. 3 3
355 376.25 temperature 10.0 30 > th dose independent rect. 6 21
406 377.03 wind 9.0 10 < th dose independent rect. 6 21
421 377.48 temperature 25.0 90 < th dose independent rect. 2 9
460 378.65 humidity 50.0 90 > th dose dependent rect. 3 3
498 379.33 precipitation 0.1 270 < th dose independent rect. 15 14
500 379.33 precipitation 0.1 270 < th dose dependent rect. 15 14
506 379.62 temperature 10.0 30 > th dose dependent rect. 3 3
529 380.07 humidity 80.0 10 > th dose dependent sin 2 NA
538 380.31 atmosphere 1015.0 30 < th dose independent rect. 6 21
596 381.71 radiation 30.0 90 < th dose dependent rect. 15 15
626 382.03 radiation 1.0 90 > th dose independent rect. 6 11
628 382.05 wind 9.0 1440 < th dose independent rect. 3 4
629 382.05 temperature 10.0 1440 > th dose independent rect. 3 4
632 382.05 temperature 30.0 1440 < th dose independent rect. 3 4
636 382.05 humidity 50.0 1440 > th dose independent rect. 3 4
641 382.05 atmosphere 995.0 1440 > th dose independent rect. 3 4
642 382.05 radiation 40.0 1440 < th dose independent rect. 3 4
646 382.05 temperature 10.0 1440 > th dose independent rect. 7 20
655 382.13 precipitation 0.1 10 < th dose independent rect. 6 21
656 382.13 precipitation 0.1 10 < th dose dependent rect. 6 21
689 382.64 precipitation 0.1 270 < th dose independent rect. 5 10
690 382.64 precipitation 0.1 270 < th dose dependent rect. 5 10
693 382.70 humidity 80.0 10 > th dose dependent rect. 3 6
749 383.60 wind 9.0 270 < th dose independent rect. 15 14
775 383.99 temperature 25.0 30 < th dose independent rect. 3 12
783 384.08 temperature 30.0 10 < th dose dependent rect. 3 12
800 384.30 humidity 50.0 10 > th dose dependent rect. 2 19
802 384.37 temperature 30.0 30 < th dose dependent rect. 3 14
846 384.94 wind 9.0 90 < th dose dependent rect. 6 20
851 385.05 temperature 15.0 270 > th dose independent rect. 15 14
921 386.15 radiation 1.0 270 < th dose independent sin 5 NA
949 386.34 humidity 90.0 90 > th dose independent rect. 3 14
955 386.44 humidity 90.0 90 > th dose independent rect. 3 12
958 386.46 wind 9.0 270 < th dose independent rect. 5 10
965 386.60 radiation 1.0 270 > th dose independent sin 5 NA
975 386.90 radiation 40.0 270 < th dose independent rect. 15 14