Os09g0525600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UBA-like domain containing protein.
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Os09g0525600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UBA-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.97 | 0.176 | 11.3 | -0.158 | 0.259 | -0.448 | -0.59 | -0.612 | 0.0746 | 20.9 | -0.04591 | 123 | -- | -- |
| 14.49 | 0.177 | 11.3 | -0.155 | 0.281 | -0.432 | -0.379 | -- | 0.077 | 20.4 | -4.37 | 174 | -- | -- |
| 14.71 | 0.179 | 11.3 | -0.141 | 0.316 | -0.38 | -- | -0.225 | 0.0764 | 21 | -6.582 | 212 | -- | -- |
| 14.82 | 0.179 | 11.3 | -0.142 | 0.316 | -0.37 | -- | -- | 0.0763 | 21.1 | -8.358 | 212 | -- | -- |
| 17.7 | 0.196 | 11.3 | -0.166 | -- | -0.583 | -- | -0.127 | 0.0761 | -- | -18.62 | 92 | -- | -- |
| 16.52 | 0.191 | 11.3 | -0.158 | 0.451 | -- | -0.119 | -- | 0.0516 | 23.1 | -- | -- | -- | -- |
| 16.57 | 0.191 | 11.3 | -0.153 | 0.451 | -- | -- | -- | 0.0519 | 23.1 | -- | -- | -- | -- |
| 17.72 | 0.196 | 11.3 | -0.153 | -- | -0.598 | -- | -- | 0.0763 | -- | -17.9 | 79 | -- | -- |
| 15.35 | 0.182 | 11.3 | -- | 0.315 | -0.379 | -- | -- | 0.0926 | 21 | -9.706 | 213 | -- | -- |
| 29.28 | 0.253 | 11.3 | -0.143 | -- | -- | -- | -- | 0.0556 | -- | -- | -- | -- | -- |
| 17.2 | 0.194 | 11.3 | -- | 0.45 | -- | -- | -- | 0.069 | 23.1 | -- | -- | -- | -- |
| 18.34 | 0.199 | 11.3 | -- | -- | -0.596 | -- | -- | 0.0932 | -- | -22.88 | 79 | -- | -- |
| 29.82 | 0.255 | 11.3 | -- | -- | -- | -- | -- | 0.0715 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 3 | 12.31 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 13 | 12.57 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 104 | 13.32 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 111 | 13.35 | temperature | 25.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 119 | 13.36 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 125 | 13.37 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 9 |
| 136 | 13.39 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 152 | 13.41 | radiation | 10.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 177 | 13.44 | temperature | 25.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 201 | 13.46 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 222 | 13.50 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 229 | 13.51 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 239 | 13.53 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 9 | 9 |
| 254 | 13.54 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 277 | 13.58 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 278 | 13.58 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 279 | 13.59 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 280 | 13.59 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 281 | 13.59 | humidity | 90.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 282 | 13.59 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 16 |
| 287 | 13.60 | radiation | 10.0 | 270 | > th | dose independent | sin | 2 | NA |
| 291 | 13.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 304 | 13.62 | wind | 7.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 340 | 13.65 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 22 |
| 352 | 13.66 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 353 | 13.66 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 364 | 13.67 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 367 | 13.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 391 | 13.71 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 402 | 13.72 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 8 |
| 404 | 13.72 | radiation | 40.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 409 | 13.72 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 414 | 13.72 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 6 | 14 |
| 424 | 13.73 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 436 | 13.74 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 437 | 13.74 | temperature | 10.0 | 90 | > th | dose independent | rect. | 17 | 16 |
| 464 | 13.76 | radiation | 1.0 | 90 | > th | dose dependent | sin | 21 | NA |
| 471 | 13.77 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 480 | 13.78 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 481 | 13.78 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 16 |
| 502 | 13.79 | radiation | 30.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 505 | 13.79 | radiation | 30.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 520 | 13.80 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 534 | 13.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 539 | 13.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 604 | 13.84 | temperature | 10.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 616 | 13.84 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 16 |
| 623 | 13.85 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 626 | 13.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 627 | 13.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 642 | 13.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 643 | 13.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 648 | 13.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 662 | 13.88 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 664 | 13.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 696 | 13.89 | wind | 9.0 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 739 | 13.92 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 740 | 13.92 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 742 | 13.92 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 18 |
| 801 | 13.95 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 9 |
| 815 | 13.95 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 17 | 16 |
| 828 | 13.95 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 831 | 13.95 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 875 | 13.97 | radiation | 10.0 | 90 | > th | dose independent | sin | 22 | NA |
| 881 | 13.97 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 17 |
| 907 | 13.98 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 18 | 15 |
| 916 | 13.99 | radiation | 1.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 995 | 14.02 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 14 |