Os09g0525500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : YY1 protein precursor.
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Os09g0525500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : YY1 protein precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 265.36 | 0.765 | 6.97 | 3.29 | 1.84 | -2.59 | -0.122 | 0.783 | 0.341 | 17.5 | 17.03 | 2648 | -- | -- |
| 265.88 | 0.759 | 7 | 3.08 | 1.84 | -2.56 | -0.172 | -- | 0.277 | 17.5 | 17.2 | 2676 | -- | -- |
| 265.16 | 0.758 | 6.97 | 3.33 | 1.84 | -2.53 | -- | 0.938 | 0.35 | 17.5 | 17.75 | 2666 | -- | -- |
| 265.97 | 0.76 | 7 | 3.08 | 1.84 | -2.55 | -- | -- | 0.28 | 17.5 | 17.28 | 2674 | -- | -- |
| 439.07 | 0.976 | 6.95 | 3.29 | -- | -2.82 | -- | 0.547 | 0.332 | -- | 17.1 | 2716 | -- | -- |
| 421.99 | 0.963 | 7.13 | 2.02 | 2 | -- | -0.217 | -- | -0.283 | 17.1 | -- | -- | -- | -- |
| 422.11 | 0.962 | 7.13 | 2.02 | 2 | -- | -- | -- | -0.284 | 17.1 | -- | -- | -- | -- |
| 439.35 | 0.976 | 6.96 | 3.14 | -- | -2.82 | -- | -- | 0.295 | -- | 17 | 2720 | -- | -- |
| 464.04 | 1 | 7.12 | -- | 1.83 | -1.36 | -- | -- | -0.257 | 17.4 | 20.96 | 1297 | -- | -- |
| 632.71 | 1.18 | 7.11 | 1.95 | -- | -- | -- | -- | -0.335 | -- | -- | -- | -- | -- |
| 529.48 | 1.08 | 7.18 | -- | 1.97 | -- | -- | -- | -0.509 | 17.1 | -- | -- | -- | -- |
| 638.48 | 1.18 | 7.09 | -- | -- | -1.61 | -- | -- | -0.249 | -- | 21.3 | 1278 | -- | -- |
| 732.65 | 1.26 | 7.15 | -- | -- | -- | -- | -- | -0.551 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 257.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 2 | 258.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 9 | 261.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 11 | 262.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 13 | 262.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 143 | 267.77 | temperature | 15 | 1440 | > th | dose dependent | sin | 7 | NA |
| 176 | 268.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 325 | 270.66 | temperature | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 443 | 272.77 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 450 | 272.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 573 | 274.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 16 |
| 618 | 275.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 10 |
| 677 | 275.61 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 714 | 275.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 780 | 276.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 981 | 276.78 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 12 |