Os09g0525200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF947 family protein.
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Os09g0525200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF947 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.21 | 0.451 | 9.3 | -1.07 | 0.629 | 1.09 | 0.516 | -1.28 | -0.425 | 17.1 | 18.62 | 87 | -- | -- |
| 93.39 | 0.45 | 9.27 | -0.85 | 0.635 | 1.06 | 0.108 | -- | -0.356 | 16.9 | 18 | 94 | -- | -- |
| 92.64 | 0.448 | 9.29 | -1.01 | 0.633 | 1.09 | -- | -0.912 | -0.405 | 16.9 | 18.36 | 92 | -- | -- |
| 93.41 | 0.45 | 9.27 | -0.854 | 0.638 | 1.05 | -- | -- | -0.358 | 16.8 | 18 | 99 | -- | -- |
| 106.94 | 0.482 | 9.3 | -1.18 | -- | 1.59 | -- | -1.07 | -0.5 | -- | 18.9 | 141 | -- | -- |
| 108.76 | 0.489 | 9.23 | -0.61 | 0.979 | -- | 0.131 | -- | -0.183 | 16.2 | -- | -- | -- | -- |
| 108.81 | 0.488 | 9.23 | -0.608 | 0.979 | -- | -- | -- | -0.182 | 16.2 | -- | -- | -- | -- |
| 107.93 | 0.484 | 9.28 | -0.994 | -- | 1.58 | -- | -- | -0.453 | -- | 18.22 | 165 | -- | -- |
| 110.58 | 0.49 | 9.24 | -- | 0.75 | 0.701 | -- | -- | -0.216 | 16.5 | 18.91 | 99 | -- | -- |
| 160.63 | 0.592 | 9.23 | -0.648 | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
| 118.57 | 0.509 | 9.22 | -- | 0.991 | -- | -- | -- | -0.114 | 16.2 | -- | -- | -- | -- |
| 131.74 | 0.535 | 9.25 | -- | -- | 1.28 | -- | -- | -0.31 | -- | 19.56 | 139 | -- | -- |
| 171.7 | 0.612 | 9.21 | -- | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 3 | 88.75 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 4 | 88.81 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 10 | 89.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 11 | 89.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 14 | 89.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 19 | 89.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 36 | 90.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 44 | 90.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 46 | 90.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 57 | 90.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 66 | 90.90 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 82 | 91.13 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 11 |
| 88 | 91.17 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 103 | 91.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 119 | 91.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 145 | 91.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 162 | 91.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 182 | 91.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 206 | 92.02 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 218 | 92.09 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 238 | 92.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 263 | 92.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 285 | 92.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 292 | 92.43 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 298 | 92.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 306 | 92.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 336 | 92.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 340 | 92.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 360 | 92.70 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 391 | 92.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 405 | 92.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 436 | 92.90 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 18 |
| 456 | 92.96 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 506 | 93.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 518 | 93.10 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 524 | 93.11 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 15 |
| 543 | 93.17 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 16 |
| 650 | 93.42 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 654 | 93.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 662 | 93.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 684 | 93.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 710 | 93.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 769 | 93.69 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 812 | 93.82 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 21 |
| 823 | 93.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 840 | 93.87 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 864 | 93.93 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 865 | 93.93 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 872 | 93.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 888 | 93.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 896 | 93.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |