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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0524300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Multi antimicrobial extrusion protein MatE family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.148) R2 : -2.92
β1 : -1.84 (0.545) R2dD : 0.104 R2D : 0.0989
β2 : 1.4 (0.375) R2dC : 0.494 R2C : 0.0862
β3 : 5.83 (0.425) R2dE : -2.21 R2E : -1.99
β4 : -3.15 (1.43) R2dD*C : -0.106 R2D*C : 0.0542
β5 : 22.8 (1.95) R2dD*E : -1.59 R2D*E : -0.84
γ1 : -0.436 (0.315) R2dN8 : -0.00665 R2N8 : -0.0317
σ : 1.03
deviance : 482.98
__
_____
C
peak time of C : 13.3
E
wheather : radiation
threshold : 4
memory length : 8
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3
open length of G : 4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
482.98 1.03 3.74 -1.84 1.4 5.83 -3.15 22.8 -0.436 13.3 4 8 3 4
577.48 1.13 4.1 -2.12 1.33 0.432 -3.75 -- -0.681 13.4 4 8 3 4
604.6 1.15 4.08 -2.13 1.33 0.204 -- 3.39 -0.704 12.4 4 8 3 4
623.62 1.16 4.1 -2.26 1.4 0.521 -- -- -0.687 12.8 11.95 8 2.99 3.88
697.28 1.24 4.09 -2 -- -0.138 -- 3.98 -0.698 -- 9.94 19 2.22 4.48
585.12 1.13 4.1 -2.09 1.22 -- -3.66 -- -0.709 13.1 -- -- -- --
633.53 1.18 4.11 -2.23 1.27 -- -- -- -0.736 11.9 -- -- -- --
734.19 1.27 4.13 -2.28 -- 0.11 -- -- -0.743 -- 19.22 23 3.15 3.48
758.38 1.29 4.04 -- 1.4 0.421 -- -- -0.438 12.7 30.23 9 3.51 2.96
734.91 1.27 4.13 -2.27 -- -- -- -- -0.753 -- -- -- -- --
765.05 1.29 4.05 -- 1.3 -- -- -- -0.487 12 -- -- -- --
863.77 1.37 4.07 -- -- 0.58 -- -- -0.542 -- 11.81 42 4.35 1.09
871.13 1.38 4.08 -- -- -- -- -- -0.501 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 482.98 radiation 30 4320 < th dose independent rect. 3 4
2 484.56 radiation 30 4320 < th dose independent rect. 23 8
3 486.76 temperature 15 720 > th dose independent rect. 11 18
5 487.94 radiation 30 4320 < th dose independent rect. 1 6
6 488.41 radiation 20 4320 < th dose independent rect. 5 1
11 491.76 temperature 15 720 > th dose independent rect. 5 23
12 491.85 temperature 30 720 < th dose dependent rect. 3 11
14 492.18 temperature 15 720 > th dose independent rect. 23 18
29 496.07 temperature 15 720 > th dose independent rect. 17 23
31 496.76 temperature 30 720 < th dose dependent rect. 3 4
40 498.54 temperature 30 720 < th dose dependent rect. 3 6
41 498.56 temperature 15 720 > th dose independent rect. 16 18
46 498.88 temperature 15 720 > th dose independent rect. 22 5
49 499.30 temperature 30 720 < th dose dependent sin 4 NA
57 500.12 temperature 15 720 > th dose independent rect. 3 23
59 500.20 temperature 15 720 > th dose independent rect. 15 23
60 500.21 temperature 30 720 < th dose dependent rect. 3 2
87 502.41 temperature 15 720 > th dose independent rect. 14 14
91 502.98 temperature 10 720 > th dose dependent rect. 22 13
115 504.37 temperature 15 720 > th dose independent sin 12 NA
123 504.67 temperature 10 720 > th dose dependent rect. 23 11
125 504.96 temperature 10 720 > th dose dependent rect. 18 17
132 505.27 temperature 10 720 > th dose dependent rect. 20 15
139 505.69 humidity 50 43200 > th dose independent rect. 5 1
153 506.21 temperature 15 720 > th dose independent rect. 5 14
157 506.43 temperature 15 720 > th dose independent rect. 7 10
162 506.61 temperature 15 720 > th dose independent rect. 22 23
166 506.80 temperature 10 720 > th dose dependent sin 8 NA
187 507.65 temperature 15 4320 < th dose dependent rect. 1 1
199 507.97 temperature 20 720 > th dose independent rect. 5 12
220 508.36 humidity 60 43200 > th dose independent rect. 4 3
241 508.89 humidity 50 43200 < th dose dependent rect. 8 1
245 508.99 temperature 15 720 > th dose independent rect. 21 17
253 509.32 temperature 10 270 > th dose dependent sin 5 NA
256 509.39 radiation 20 4320 > th dose dependent rect. 6 2
275 509.50 temperature 15 4320 < th dose dependent rect. 20 8
277 509.55 humidity 50 43200 > th dose dependent rect. 20 4
281 509.62 temperature 15 14400 < th dose independent rect. 7 3
283 509.65 humidity 50 43200 < th dose dependent rect. 19 14
295 509.83 temperature 15 720 > th dose independent rect. 1 14
299 509.88 radiation 1 4320 > th dose independent rect. 4 1
310 509.88 radiation 1 4320 > th dose dependent rect. 4 1
332 510.09 temperature 15 14400 > th dose independent rect. 5 15
337 510.12 humidity 50 43200 < th dose dependent rect. 18 16
338 510.15 temperature 15 14400 < th dose independent rect. 4 18
342 510.19 temperature 15 14400 < th dose independent rect. 4 16
347 510.24 humidity 50 43200 < th dose dependent sin 9 NA
348 510.25 humidity 50 43200 > th dose dependent rect. 18 7
349 510.26 humidity 70 14400 < th dose independent rect. 21 1
360 510.28 temperature 15 4320 < th dose dependent sin 12 NA
370 510.38 temperature 15 14400 > th dose independent rect. 5 18
371 510.38 temperature 15 4320 < th dose dependent rect. 15 14
380 510.44 temperature 15 14400 > th dose independent sin 23 NA
381 510.46 radiation 30 4320 < th dose independent rect. 17 15
408 510.66 wind 7 14400 < th dose independent rect. 5 6
410 510.67 wind 7 14400 < th dose independent rect. 4 8
421 510.74 temperature 15 14400 < th dose independent sin 0 NA
428 510.76 humidity 50 14400 > th dose independent rect. 18 9
440 510.81 humidity 50 43200 < th dose dependent rect. 14 20
489 510.98 wind 7 14400 < th dose independent rect. 23 13
495 511.01 wind 7 43200 > th dose dependent rect. 9 2
554 511.25 humidity 80 43200 < th dose dependent rect. 23 1
565 511.30 temperature 20 43200 < th dose dependent rect. 8 1
577 511.35 temperature 15 14400 > th dose independent rect. 8 1
578 511.35 humidity 50 43200 > th dose independent rect. 23 7
589 511.41 temperature 15 14400 < th dose independent rect. 20 2
613 511.50 wind 7 14400 > th dose independent rect. 5 6
619 511.52 temperature 15 14400 > th dose independent rect. 6 5
620 511.52 temperature 15 14400 < th dose independent rect. 15 9
661 511.68 temperature 10 720 > th dose dependent rect. 5 6
667 511.70 humidity 50 43200 < th dose independent rect. 19 3
675 511.72 wind 7 43200 > th dose dependent rect. 8 4
678 511.73 temperature 15 720 > th dose independent sin 3 NA
680 511.73 temperature 15 14400 > th dose independent rect. 14 10
698 511.80 humidity 50 43200 > th dose independent rect. 19 6
701 511.81 humidity 50 43200 > th dose independent rect. 19 4
705 511.82 wind 7 14400 > th dose independent rect. 4 8
707 511.83 temperature 15 14400 > th dose independent rect. 7 3
712 511.84 temperature 15 4320 < th dose dependent rect. 18 19
713 511.85 radiation 20 4320 > th dose independent rect. 6 2
741 511.88 temperature 15 4320 < th dose dependent rect. 15 22
745 511.90 humidity 50 43200 > th dose independent rect. 19 2
770 511.95 atmosphere 1015 1440 < th dose independent rect. 3 3
783 511.97 humidity 50 43200 < th dose independent rect. 21 1
806 512.00 humidity 60 43200 < th dose dependent rect. 21 3
809 512.01 humidity 50 43200 < th dose dependent rect. 21 1
820 512.02 temperature 15 4320 < th dose dependent rect. 19 22
822 512.02 temperature 15 4320 < th dose dependent rect. 23 23
842 512.07 atmosphere 1015 90 < th dose dependent rect. 23 12
845 512.08 temperature 15 14400 < th dose independent sin 17 NA
849 512.09 wind 7 14400 > th dose independent rect. 23 13
859 512.11 humidity 50 43200 > th dose dependent sin 13 NA
913 512.21 temperature 15 4320 < th dose dependent no NA NA
980 512.35 humidity 60 43200 > th dose independent rect. 21 3
994 512.38 wind 9 43200 < th dose independent sin 8 NA
995 512.38 temperature 15 4320 < th dose dependent rect. 4 23
998 512.39 humidity 50 43200 < th dose dependent rect. 18 2