Os09g0521700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to H/ACA ribonucleoprotein complex subunit 1 (Nucleolar protein family A member 1) (snoRNP protein GAR1).
FiT-DB / Search/ Help/ Sample detail
|
Os09g0521700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to H/ACA ribonucleoprotein complex subunit 1 (Nucleolar protein family A member 1) (snoRNP protein GAR1).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.71 | 0.281 | 9.68 | 1.83 | 0.709 | -0.813 | -0.134 | 2.53 | 0.266 | 17 | 23.8 | 1323 | -- | -- |
| 38.25 | 0.288 | 9.75 | 1.15 | 0.74 | -0.617 | -0.288 | -- | 0.109 | 16.8 | 20.65 | 1331 | -- | -- |
| 35.75 | 0.278 | 9.68 | 1.82 | 0.707 | -0.814 | -- | 2.53 | 0.265 | 17 | 23.77 | 1310 | -- | -- |
| 38.26 | 0.288 | 9.75 | 1.14 | 0.721 | -0.634 | -- | -- | 0.113 | 17 | 20.47 | 1287 | -- | -- |
| 61.22 | 0.364 | 9.67 | 1.82 | -- | -0.946 | -- | 2.54 | 0.258 | -- | 23.84 | 1267 | -- | -- |
| 50.67 | 0.334 | 9.79 | 0.922 | 0.772 | -- | -0.186 | -- | -0.0286 | 16.7 | -- | -- | -- | -- |
| 50.76 | 0.334 | 9.79 | 0.921 | 0.771 | -- | -- | -- | -0.0296 | 16.7 | -- | -- | -- | -- |
| 64.26 | 0.373 | 9.74 | 1.15 | -- | -0.752 | -- | -- | 0.123 | -- | 20.7 | 1267 | -- | -- |
| 69.03 | 0.387 | 9.8 | -- | 0.717 | -0.336 | -- | -- | -0.076 | 17 | 22.14 | 1219 | -- | -- |
| 82.26 | 0.424 | 9.78 | 0.892 | -- | -- | -- | -- | -0.0497 | -- | -- | -- | -- | -- |
| 73.12 | 0.4 | 9.81 | -- | 0.754 | -- | -- | -- | -0.132 | 16.7 | -- | -- | -- | -- |
| 95.46 | 0.455 | 9.79 | -- | -- | -0.449 | -- | -- | -0.0908 | -- | 23.9 | 1254 | -- | -- |
| 103.25 | 0.474 | 9.8 | -- | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 2 | 35.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 3 | 35.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 13 | 35.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 22 | 35.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 35 | 35.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 40 | 35.81 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 142 | 36.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 20 |
| 152 | 36.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 153 | 36.25 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 165 | 36.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 171 | 36.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 235 | 36.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 281 | 36.50 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 299 | 36.57 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 311 | 36.61 | temperature | 25 | 1440 | > th | dose independent | sin | 15 | NA |
| 320 | 36.63 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 441 | 36.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 453 | 36.98 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 513 | 37.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 514 | 37.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 758 | 37.49 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 831 | 37.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 832 | 37.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 862 | 37.62 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 865 | 37.62 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 871 | 37.63 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 877 | 37.63 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 22 |
| 901 | 37.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 971 | 37.73 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 982 | 37.74 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 1000 | 37.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 21 |