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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0520300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0371) R2 : 0.00117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.057 (0.078) R2dN8 : 0.00151 R2N8 : 0.00117
σ : 0.698
deviance : 223.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.08 0.684 2.81 0.0585 0.00256 -3.83 -0.732 -17 -0.00778 17.1 9.7 247 -- --
220.36 0.691 2.87 0.15 0.038 -0.311 -0.932 -- -0.038 16 10.62 87 -- --
213.38 0.68 2.8 0.0549 0.00867 -3.7 -- -17.3 -0.00868 5.14 9.8 259 -- --
222.78 0.695 2.87 0.139 0.0425 -0.209 -- -- -0.0431 12.8 10.64 80 -- --
213.36 0.68 2.8 0.0433 -- -3.97 -- -18.5 -0.00531 -- 9.824 260 -- --
220.63 0.696 2.87 0.158 0.0315 -- -0.898 -- -0.0351 16 -- -- -- --
222.88 0.699 2.87 0.147 0.0393 -- -- -- -0.0401 12.4 -- -- -- --
222.89 0.695 2.87 0.14 -- -0.218 -- -- -0.0429 -- 10.67 83 -- --
223.31 0.696 2.88 -- 0.0363 -0.239 -- -- -0.0552 12.2 10.65 105 -- --
222.98 0.698 2.87 0.146 -- -- -- -- -0.0408 -- -- -- -- --
223.45 0.699 2.88 -- 0.0372 -- -- -- -0.0565 12.2 -- -- -- --
223.4 0.696 2.88 -- -- -0.271 -- -- -0.0588 -- 10.67 90 -- --
223.54 0.698 2.88 -- -- -- -- -- -0.057 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.06 wind 1.0 270 < th dose dependent rect. 4 1
2 198.79 wind 5.0 90 > th dose independent rect. 2 1
3 198.80 wind 5.0 90 > th dose dependent rect. 2 1
5 200.91 wind 1.0 270 < th dose independent rect. 4 1
6 202.58 wind 1.0 10 < th dose independent rect. 8 1
8 202.58 wind 1.0 10 < th dose dependent rect. 8 1
11 204.92 wind 1.0 270 < th dose dependent rect. 4 4
13 205.77 atmosphere 1005.0 30 > th dose dependent rect. 5 3
23 207.03 temperature 20.0 270 < th dose independent rect. 3 2
27 207.83 wind 5.0 90 > th dose dependent rect. 2 3
34 208.01 wind 5.0 90 > th dose independent rect. 2 3
37 208.09 precipitation 0.1 10 > th dose independent rect. 19 1
47 208.09 precipitation 0.1 10 > th dose dependent rect. 19 1
58 208.24 wind 5.0 30 > th dose dependent rect. 12 1
65 208.88 atmosphere 1005.0 270 > th dose dependent rect. 4 1
66 208.90 temperature 25.0 270 < th dose dependent rect. 2 4
71 208.94 temperature 25.0 270 < th dose dependent rect. 1 6
72 208.95 wind 1.0 90 < th dose independent rect. 6 1
76 209.31 precipitation 0.1 10 > th dose independent rect. 7 13
80 209.31 precipitation 0.1 10 > th dose dependent rect. 7 13
94 209.60 temperature 20.0 10 < th dose independent rect. 3 4
136 209.79 temperature 20.0 10 < th dose dependent rect. 4 9
172 210.17 temperature 20.0 10 < th dose independent rect. 3 10
176 210.22 atmosphere 1000.0 10 < th dose independent rect. 8 2
177 210.22 atmosphere 1000.0 90 < th dose independent rect. 7 3
179 210.24 atmosphere 1000.0 90 < th dose independent rect. 8 1
191 210.25 wind 1.0 270 < th dose independent rect. 4 4
192 210.25 atmosphere 1000.0 90 < th dose independent rect. 5 5
195 210.28 atmosphere 1000.0 10 < th dose independent rect. 6 5
197 210.29 atmosphere 1000.0 10 < th dose independent rect. 4 7
198 210.30 atmosphere 1000.0 270 < th dose independent rect. 6 1
203 210.30 atmosphere 1000.0 90 < th dose independent rect. 3 7
209 210.31 atmosphere 1000.0 90 < th dose independent rect. 1 9
219 210.35 atmosphere 1000.0 10 < th dose independent rect. 2 9
267 210.62 wind 1.0 270 < th dose dependent rect. 4 12
278 210.70 wind 1.0 270 < th dose dependent rect. 4 9
280 210.73 wind 1.0 10 > th dose dependent rect. 21 16
287 210.77 humidity 80.0 10 > th dose independent rect. 8 1
303 210.83 atmosphere 1000.0 90 < th dose dependent rect. 9 1
320 210.90 wind 7.0 10 > th dose independent rect. 12 1
323 210.91 wind 9.0 10 < th dose independent rect. 13 23
341 210.95 temperature 20.0 30 < th dose independent rect. 3 7
355 210.99 temperature 20.0 10 < th dose dependent sin 23 NA
358 211.00 temperature 15.0 270 > th dose independent rect. 2 15
373 211.06 humidity 80.0 10 < th dose independent rect. 5 1
379 211.06 humidity 80.0 10 < th dose dependent rect. 5 1
389 211.09 temperature 30.0 30 < th dose dependent rect. 12 1
390 211.09 humidity 60.0 10 > th dose dependent rect. 12 1
402 211.17 wind 7.0 30 > th dose dependent rect. 19 1
404 211.19 atmosphere 1000.0 30 < th dose dependent rect. 6 5
405 211.20 humidity 90.0 90 > th dose dependent rect. 6 1
415 211.25 atmosphere 1000.0 270 < th dose dependent rect. 6 1
444 211.37 temperature 25.0 90 < th dose dependent rect. 2 19
450 211.40 precipitation 0.1 270 > th dose independent rect. 24 1
451 211.40 precipitation 0.1 270 > th dose dependent rect. 24 1
473 211.49 atmosphere 1015.0 1440 > th dose dependent rect. 15 6
475 211.50 atmosphere 1015.0 1440 > th dose independent rect. 16 5
477 211.50 atmosphere 1015.0 1440 > th dose dependent rect. 17 4
486 211.51 atmosphere 1000.0 30 < th dose dependent rect. 4 7
510 211.56 temperature 15.0 1440 > th dose independent rect. 6 18
611 211.81 atmosphere 1015.0 1440 < th dose independent rect. 15 7
612 211.81 temperature 15.0 90 > th dose independent rect. 2 18
619 211.83 atmosphere 1000.0 30 < th dose dependent rect. 2 9
644 211.88 wind 1.0 10 > th dose dependent rect. 8 5
656 211.91 atmosphere 1015.0 1440 < th dose independent rect. 15 10
662 211.92 temperature 15.0 1440 > th dose independent rect. 6 15
742 212.02 temperature 15.0 1440 > th dose independent rect. 6 12
745 212.02 wind 9.0 270 > th dose dependent rect. 11 23
754 212.04 temperature 20.0 270 < th dose independent rect. 2 10
755 212.05 temperature 20.0 30 < th dose independent sin 3 NA
794 212.10 humidity 80.0 270 > th dose dependent rect. 9 1
800 212.12 atmosphere 1015.0 1440 < th dose independent rect. 15 15
823 212.15 atmosphere 1015.0 1440 < th dose independent rect. 15 19
827 212.15 wind 9.0 270 > th dose dependent rect. 18 16
829 212.16 atmosphere 1015.0 1440 > th dose independent sin 14 NA
876 212.22 atmosphere 1010.0 720 > th dose dependent rect. 1 1
926 212.27 radiation 10.0 43200 < th dose dependent rect. 21 7
935 212.28 temperature 15.0 4320 > th dose independent rect. 6 3
939 212.28 atmosphere 995.0 270 > th dose dependent rect. 9 1
946 212.29 temperature 15.0 90 > th dose independent rect. 5 15
952 212.30 wind 9.0 270 > th dose dependent sin 11 NA
953 212.30 atmosphere 1015.0 1440 > th dose dependent sin 14 NA