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Os09g0520100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA polymerase delta, subunit 4 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.69 (0.0128) R2 : 0.523
β1 : -1.04 (0.0469) R2dD : 0.535 R2D : 0.458
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.186 (0.0273) R2dN8 : 0.0652 R2N8 : -0.0121
σ : 0.24
deviance : 26.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.01 0.199 8.7 -0.908 0.221 -0.336 0.461 -0.28 -0.223 11.9 49 4111 -- --
18.06 0.198 8.7 -0.89 0.217 -0.431 0.474 -- -0.226 11.9 49.05 4049 -- --
18.76 0.202 8.7 -0.892 0.219 -0.352 -- -0.328 -0.224 11 49 4029 -- --
18.85 0.202 8.7 -0.862 0.218 -0.455 -- -- -0.228 11 49.06 4036 -- --
21.75 0.217 8.71 -0.864 -- -0.394 -- -0.335 -0.226 -- 49 3997 -- --
21.32 0.216 8.69 -1.06 0.246 -- 0.562 -- -0.185 12 -- -- -- --
22.56 0.222 8.69 -1.03 0.249 -- -- -- -0.184 11.2 -- -- -- --
21.74 0.217 8.7 -0.846 -- -0.51 -- -- -0.235 -- 49 4015 -- --
34.72 0.274 8.69 -- 0.214 -0.821 -- -- -0.191 11 49.3 4323 -- --
26.44 0.24 8.69 -1.04 -- -- -- -- -0.186 -- -- -- -- --
50.75 0.333 8.66 -- 0.26 -- -- -- -0.0689 11.5 -- -- -- --
37.28 0.284 8.7 -- -- -0.881 -- -- -0.196 -- 49.73 4152 -- --
54.99 0.346 8.67 -- -- -- -- -- -0.0709 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.12 humidity 80 14400 < th dose independent rect. 22 2
4 17.25 humidity 80 14400 < th dose dependent rect. 22 1
7 17.33 humidity 80 14400 < th dose independent rect. 21 10
9 17.35 humidity 80 14400 > th dose independent rect. 22 9
11 17.36 humidity 80 14400 < th dose dependent rect. 21 4
22 17.42 humidity 80 14400 > th dose independent rect. 22 5
35 17.47 humidity 80 14400 < th dose dependent rect. 21 10
37 17.51 wind 9 14400 < th dose independent rect. 20 18
59 17.61 humidity 90 14400 < th dose dependent rect. 5 1
71 17.63 humidity 90 14400 < th dose dependent rect. 2 5
79 17.66 wind 9 14400 > th dose independent rect. 20 18
100 17.71 wind 1 14400 < th dose dependent rect. 12 1
107 17.73 humidity 80 14400 > th dose independent rect. 3 4
114 17.74 humidity 80 14400 < th dose independent rect. 4 3
121 17.74 humidity 50 4320 < th dose dependent sin 11 NA
124 17.74 wind 9 14400 > th dose dependent rect. 20 18
163 17.86 humidity 50 4320 < th dose independent rect. 14 3
167 17.87 humidity 50 4320 < th dose independent sin 15 NA
171 17.87 humidity 50 4320 < th dose independent rect. 13 5
192 17.88 humidity 80 14400 > th dose independent rect. 3 1
208 17.90 wind 9 14400 < th dose independent sin 7 NA
212 17.90 wind 9 14400 < th dose independent rect. 2 13
217 17.90 humidity 50 4320 < th dose dependent rect. 15 21
222 17.91 humidity 50 4320 < th dose independent rect. 15 1
226 17.91 wind 9 14400 < th dose independent rect. 23 16
233 17.92 temperature 20 720 > th dose independent rect. 3 4
297 17.99 radiation 30 43200 < th dose independent rect. 11 1
331 18.02 humidity 50 4320 < th dose dependent rect. 14 4
351 18.03 humidity 50 4320 < th dose independent rect. 15 23
354 18.04 wind 9 14400 < th dose independent rect. 3 18
361 18.05 humidity 50 4320 < th dose independent no NA NA
469 18.05 wind 9 14400 < th dose independent rect. 23 22
510 18.07 wind 9 14400 > th dose independent sin 7 NA
533 18.08 wind 1 14400 < th dose independent rect. 1 1
540 18.09 radiation 30 43200 > th dose independent rect. 11 1
549 18.09 wind 9 14400 < th dose independent rect. 15 23
557 18.11 wind 3 43200 > th dose independent rect. 2 1
563 18.11 wind 9 14400 < th dose independent rect. 10 21
570 18.11 wind 9 14400 < th dose independent rect. 10 23
571 18.11 wind 9 14400 < th dose independent rect. 12 23
585 18.13 wind 9 14400 < th dose independent no NA NA
590 18.13 wind 9 14400 < th dose independent rect. 8 23
595 18.14 wind 9 14400 < th dose independent rect. 12 3
600 18.14 wind 9 14400 > th dose independent rect. 3 18
616 18.15 wind 9 14400 > th dose dependent sin 7 NA
617 18.15 wind 1 43200 < th dose dependent rect. 2 1
618 18.15 wind 1 14400 < th dose dependent rect. 8 2
622 18.16 wind 9 14400 < th dose independent rect. 12 21
625 18.16 wind 9 14400 < th dose independent rect. 6 23
628 18.17 wind 9 14400 < th dose independent rect. 12 19
637 18.17 wind 9 14400 > th dose independent rect. 15 23
642 18.18 humidity 50 4320 > th dose independent sin 16 NA
645 18.18 wind 9 14400 < th dose independent rect. 10 5
654 18.18 wind 7 14400 > th dose dependent rect. 3 13
665 18.19 humidity 50 4320 > th dose independent rect. 12 22
666 18.19 wind 9 14400 > th dose independent rect. 13 23
678 18.20 humidity 50 4320 > th dose independent rect. 12 6
699 18.20 humidity 50 4320 > th dose independent rect. 12 20
705 18.20 wind 9 14400 > th dose independent rect. 10 22
710 18.21 wind 9 14400 > th dose independent no NA NA
729 18.21 wind 9 14400 > th dose dependent rect. 3 18
734 18.21 wind 9 14400 > th dose dependent rect. 15 23
752 18.22 wind 9 14400 > th dose independent rect. 7 23
765 18.23 wind 3 14400 < th dose independent rect. 4 1
787 18.23 wind 9 14400 > th dose dependent rect. 10 22
790 18.23 wind 9 14400 > th dose dependent rect. 12 23
792 18.24 wind 3 14400 > th dose independent rect. 2 3
799 18.24 wind 9 14400 < th dose independent rect. 10 11
813 18.24 wind 9 14400 > th dose dependent no NA NA
814 18.24 radiation 1 43200 < th dose dependent rect. 21 7
846 18.25 wind 9 14400 < th dose independent rect. 8 13
866 18.25 wind 9 14400 > th dose dependent rect. 12 19
877 18.25 wind 9 14400 > th dose dependent rect. 7 23
903 18.26 humidity 50 4320 > th dose independent rect. 15 23
904 18.26 wind 7 14400 > th dose dependent sin 2 NA
906 18.26 wind 7 14400 > th dose dependent rect. 15 1
921 18.27 wind 3 14400 < th dose independent rect. 2 3
931 18.27 wind 9 43200 > th dose dependent rect. 13 1
974 18.30 wind 9 14400 < th dose independent rect. 10 14