Os09g0520000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0520000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.97 | 0.304 | 8.96 | -1.54 | 0.777 | -0.799 | -1.58 | -0.451 | -0.359 | 11.4 | 29.64 | 10 | -- | -- |
| 42.23 | 0.303 | 8.96 | -1.59 | 0.787 | -0.816 | -1.44 | -- | -0.359 | 11.3 | 31.06 | 10 | -- | -- |
| 50.1 | 0.332 | 8.99 | -1.83 | 0.797 | -0.757 | -- | 0.918 | -0.418 | 11.5 | 29.64 | 10 | -- | -- |
| 51.26 | 0.333 | 8.97 | -1.68 | 0.795 | -0.781 | -- | -- | -0.371 | 11.4 | 30.39 | 10 | -- | -- |
| 81.43 | 0.423 | 9.03 | -1.97 | -- | -1.4 | -- | 0.811 | -0.544 | -- | 29.64 | 10 | -- | -- |
| 51.18 | 0.335 | 8.93 | -1.44 | 0.997 | -- | -1.37 | -- | -0.221 | 12 | -- | -- | -- | -- |
| 59.37 | 0.361 | 8.94 | -1.49 | 1 | -- | -- | -- | -0.226 | 12.1 | -- | -- | -- | -- |
| 82.38 | 0.425 | 9.02 | -1.84 | -- | -1.4 | -- | -- | -0.506 | -- | 29.64 | 10 | -- | -- |
| 117.83 | 0.508 | 8.9 | -- | 0.998 | -0.0847 | -- | -- | -0.0741 | 12.1 | 30.39 | 10 | -- | -- |
| 122.6 | 0.517 | 8.96 | -1.52 | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
| 117.94 | 0.508 | 8.9 | -- | 1.02 | -- | -- | -- | -0.0605 | 12.2 | -- | -- | -- | -- |
| 165.65 | 0.601 | 8.95 | -- | -- | -0.914 | -- | -- | -0.217 | -- | 30.1 | 2 | -- | -- |
| 183.74 | 0.633 | 8.92 | -- | -- | -- | -- | -- | -0.0719 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 3 | 39.83 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 5 | 39.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 21 | 40.25 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 19 |
| 22 | 40.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 85 | 40.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 90 | 40.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 101 | 41.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 110 | 41.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 114 | 41.18 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 22 |
| 232 | 41.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 246 | 41.78 | radiation | 1 | 270 | > th | dose independent | rect. | 16 | 22 |
| 298 | 41.99 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 308 | 42.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 331 | 42.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 345 | 42.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 375 | 42.29 | radiation | 1 | 270 | < th | dose independent | rect. | 21 | 22 |
| 377 | 42.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 393 | 42.34 | temperature | 25 | 10 | < th | dose dependent | sin | 23 | NA |
| 449 | 42.49 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 20 |
| 462 | 42.52 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 467 | 42.54 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 19 |
| 509 | 42.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 526 | 42.70 | radiation | 1 | 270 | < th | dose dependent | sin | 3 | NA |
| 548 | 42.76 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 564 | 42.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 566 | 42.80 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 22 |
| 573 | 42.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 589 | 42.84 | radiation | 1 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 608 | 42.87 | radiation | 1 | 270 | < th | dose independent | rect. | 23 | 19 |
| 683 | 43.06 | radiation | 1 | 270 | < th | dose independent | sin | 3 | NA |
| 685 | 43.06 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 714 | 43.12 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 17 |
| 720 | 43.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 728 | 43.14 | radiation | 1 | 270 | > th | dose independent | sin | 4 | NA |
| 735 | 43.16 | radiation | 1 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 742 | 43.17 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 23 |
| 753 | 43.20 | radiation | 1 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 787 | 43.28 | humidity | 90 | 30 | < th | dose independent | rect. | 9 | 16 |
| 895 | 43.48 | temperature | 25 | 270 | > th | dose dependent | sin | 10 | NA |
| 952 | 43.56 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 17 |
| 955 | 43.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 7 |