Os09g0517600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to FH protein NFH1.
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Os09g0517600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to FH protein NFH1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 284.66 | 0.793 | 7.53 | -3.73 | 2.39 | -1.89 | 2.19 | 0.893 | -1.08 | 6.65 | 17.73 | 10 | -- | -- |
| 287.31 | 0.789 | 7.53 | -3.76 | 2.36 | -2.02 | 1.98 | -- | -1.09 | 6.3 | 15.78 | 10 | -- | -- |
| 295.47 | 0.801 | 7.53 | -3.7 | 2.4 | -1.85 | -- | 0.472 | -1.09 | 6.65 | 16.54 | 10 | -- | -- |
| 296.65 | 0.802 | 7.53 | -3.72 | 2.39 | -1.86 | -- | -- | -1.09 | 6.63 | 16.19 | 10 | -- | -- |
| 570.44 | 1.11 | 7.56 | -3.49 | -- | -2.12 | -- | 0.784 | -1.04 | -- | 10.37 | 6 | -- | -- |
| 352.92 | 0.881 | 7.48 | -3.7 | 3.38 | -- | 0.712 | -- | -1.05 | 8.96 | -- | -- | -- | -- |
| 354.65 | 0.882 | 7.48 | -3.67 | 3.38 | -- | -- | -- | -1.05 | 8.97 | -- | -- | -- | -- |
| 562.1 | 1.1 | 7.58 | -3.66 | -- | -2.05 | -- | -- | -1.11 | -- | 7.203 | 3 | -- | -- |
| 657.41 | 1.19 | 7.45 | -- | 2.29 | -1.82 | -- | -- | -0.696 | 6.75 | 11.7 | 8 | -- | -- |
| 1008.89 | 1.48 | 7.58 | -3.68 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 710.03 | 1.25 | 7.39 | -- | 3.37 | -- | -- | -- | -0.639 | 9.06 | -- | -- | -- | -- |
| 901.96 | 1.4 | 7.49 | -- | -- | -2.19 | -- | -- | -0.647 | -- | 9.4 | 3 | -- | -- |
| 1365.2 | 1.72 | 7.48 | -- | -- | -- | -- | -- | -0.618 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 282.01 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 3 | 285.30 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 4 | 285.73 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 8 | 285.92 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 14 | 286.48 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 16 | 286.75 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 24 | 287.93 | radiation | 1.0 | 10 | > th | dose independent | sin | 0 | NA |
| 25 | 288.45 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 26 | 289.06 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 40 | 290.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 22 |
| 42 | 290.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 52 | 291.35 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 9 | 11 |
| 77 | 293.76 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 79 | 293.79 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 85 | 294.01 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 87 | 294.06 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 98 | 294.73 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 19 |
| 103 | 294.92 | radiation | 10.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 105 | 295.05 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 114 | 295.30 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 124 | 295.48 | radiation | 10.0 | 10 | > th | dose independent | rect. | 6 | 11 |
| 159 | 296.28 | radiation | 1.0 | 10 | < th | dose independent | sin | 0 | NA |
| 167 | 296.58 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 169 | 296.68 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 13 |
| 175 | 296.90 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 10 |
| 194 | 297.09 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 230 | 297.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 21 |
| 235 | 297.87 | radiation | 10.0 | 10 | > th | dose independent | no | NA | NA |
| 405 | 298.87 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 8 |
| 409 | 298.91 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 425 | 299.18 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 439 | 299.40 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 498 | 300.11 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 19 |
| 503 | 300.15 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 505 | 300.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 14 |
| 506 | 300.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 14 |
| 518 | 300.35 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 534 | 300.63 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 550 | 300.89 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 555 | 301.02 | radiation | 30.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 559 | 301.11 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 581 | 301.25 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 19 |
| 590 | 301.34 | temperature | 15.0 | 90 | > th | dose independent | rect. | 20 | 19 |
| 622 | 301.75 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 17 |
| 631 | 301.93 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 21 |
| 726 | 302.16 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 747 | 302.27 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 756 | 302.44 | humidity | 90.0 | 90 | < th | dose independent | rect. | 20 | 20 |
| 773 | 302.65 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 19 |
| 774 | 302.65 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 19 |
| 777 | 302.67 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 10 |
| 814 | 302.98 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 822 | 303.05 | wind | 9.0 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 836 | 303.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 850 | 303.29 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 2 | 9 |
| 851 | 303.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 3 |
| 860 | 303.39 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 890 | 303.67 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 15 |
| 892 | 303.69 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 5 |
| 912 | 303.77 | wind | 9.0 | 90 | < th | dose independent | rect. | 15 | 5 |
| 915 | 303.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 931 | 303.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 3 |
| 933 | 303.88 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 942 | 303.91 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 15 |
| 961 | 304.03 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 5 |
| 962 | 304.03 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 5 |
| 963 | 304.06 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 5 |
| 965 | 304.06 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 15 | 5 |
| 975 | 304.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 997 | 304.19 | wind | 7.0 | 90 | < th | dose independent | rect. | 20 | 5 |