Os09g0515400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0515400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.16 | 0.526 | 10.7 | -1.24 | 2.25 | 1.03 | -0.47 | -0.453 | -0.32 | 22.3 | 21.6 | 1049 | -- | -- |
| 125.64 | 0.522 | 10.7 | -1.12 | 2.24 | 1.05 | -0.575 | -- | -0.291 | 22.3 | 21.67 | 1048 | -- | -- |
| 125.98 | 0.523 | 10.7 | -1.26 | 2.25 | 1.03 | -- | -0.591 | -0.334 | 22.3 | 21.62 | 1048 | -- | -- |
| 126.98 | 0.525 | 10.7 | -1.09 | 2.25 | 1.05 | -- | -- | -0.29 | 22.3 | 21.69 | 1051 | -- | -- |
| 406.51 | 0.939 | 10.7 | -1.38 | -- | 1.59 | -- | -0.509 | -0.508 | -- | 21.8 | 824 | -- | -- |
| 163.2 | 0.599 | 10.6 | -0.703 | 2.38 | -- | -0.612 | -- | 0.023 | 22.4 | -- | -- | -- | -- |
| 164.72 | 0.601 | 10.6 | -0.678 | 2.39 | -- | -- | -- | 0.0245 | 22.4 | -- | -- | -- | -- |
| 352.7 | 0.875 | 10.7 | -1.22 | -- | 1.93 | -- | -- | -0.658 | -- | 25.22 | 795 | -- | -- |
| 153.54 | 0.577 | 10.7 | -- | 2.28 | 0.781 | -- | -- | -0.103 | 22.2 | 22.04 | 1069 | -- | -- |
| 513.39 | 1.06 | 10.6 | -0.639 | -- | -- | -- | -- | 0.0329 | -- | -- | -- | -- | -- |
| 176.85 | 0.622 | 10.6 | -- | 2.38 | -- | -- | -- | 0.1 | 22.4 | -- | -- | -- | -- |
| 389.9 | 0.92 | 10.7 | -- | -- | 1.71 | -- | -- | -0.451 | -- | 25.3 | 779 | -- | -- |
| 524.15 | 1.07 | 10.6 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 4 | 120.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 9 | 121.05 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 30 | 121.61 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 91 | 122.91 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 139 | 123.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 192 | 124.50 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 9 |
| 217 | 124.77 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 218 | 124.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 255 | 125.02 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 271 | 125.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 277 | 125.27 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 303 | 125.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 402 | 126.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 434 | 126.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 3 |
| 459 | 126.66 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 482 | 126.81 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 484 | 126.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 486 | 126.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 598 | 127.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 728 | 128.13 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 865 | 128.60 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 3 |
| 891 | 128.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 905 | 128.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |