Os09g0515200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Beta 7 subunit of 20S proteasome.
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Os09g0515200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Beta 7 subunit of 20S proteasome.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.61 | 0.173 | 13.4 | -0.173 | 0.249 | -0.172 | -0.222 | -1.34 | 0.00322 | 22.4 | 20.8 | 1390 | -- | -- |
| 17.1 | 0.194 | 13.4 | 0.107 | 0.232 | -0.0451 | -0.282 | -- | 0.069 | 22.3 | 21.73 | 1730 | -- | -- |
| 13.78 | 0.173 | 13.4 | -0.169 | 0.249 | -0.161 | -- | -1.3 | 0.00417 | 22.5 | 20.9 | 1297 | -- | -- |
| 16.97 | 0.192 | 13.3 | 0.301 | 0.244 | -0.175 | -- | -- | 0.149 | 22.8 | 26.5 | 47520 | -- | -- |
| 17.57 | 0.195 | 13.4 | -0.158 | -- | -0.131 | -- | -1.28 | 0.00471 | -- | 21 | 1321 | -- | -- |
| 17.21 | 0.194 | 13.4 | 0.0943 | 0.245 | -- | -0.273 | -- | 0.0569 | 22.4 | -- | -- | -- | -- |
| 17.51 | 0.196 | 13.4 | 0.105 | 0.246 | -- | -- | -- | 0.0575 | 22.5 | -- | -- | -- | -- |
| 20.29 | 0.211 | 13.4 | 0.137 | -- | -0.11 | -- | -- | 0.0704 | -- | 27.72 | 47520 | -- | -- |
| 17.74 | 0.197 | 13.4 | -- | 0.26 | 0.0309 | -- | -- | 0.0366 | 22.9 | 26.17 | 47520 | -- | -- |
| 21.24 | 0.215 | 13.4 | 0.109 | -- | -- | -- | -- | 0.0585 | -- | -- | -- | -- | -- |
| 17.8 | 0.197 | 13.4 | -- | 0.247 | -- | -- | -- | 0.0458 | 22.6 | -- | -- | -- | -- |
| 20.23 | 0.209 | 13.4 | -- | -- | 0.205 | -- | -- | 0.0075 | -- | 12.81 | 46814 | -- | -- |
| 21.55 | 0.217 | 13.4 | -- | -- | -- | -- | -- | 0.0464 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 4 | 13.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 35 | 13.51 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 65 | 13.59 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 100 | 13.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 242 | 13.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 263 | 13.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 289 | 13.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 301 | 13.86 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 321 | 13.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 377 | 13.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 398 | 13.95 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 436 | 13.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 14 |
| 448 | 13.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 456 | 13.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 458 | 13.99 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 503 | 14.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 4 |
| 504 | 14.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 515 | 14.03 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 528 | 14.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 553 | 14.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 578 | 14.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 622 | 14.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 626 | 14.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 638 | 14.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 684 | 14.10 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 6 |
| 707 | 14.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 732 | 14.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 745 | 14.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 794 | 14.13 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 849 | 14.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 930 | 14.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 960 | 14.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 985 | 14.17 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |