Os09g0514200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase.
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Os09g0514200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 320.83 | 0.842 | 4.58 | 0.0391 | 0.295 | 7.57 | -0.892 | 12.4 | 0.0066 | 5.22 | 24.48 | 812 | 14.8 | -- |
| 358.97 | 0.882 | 4.42 | 0.727 | 0.0753 | 4.01 | 0.129 | -- | 0.224 | 2.87 | 25.88 | 865 | 11.5 | -- |
| 320.81 | 0.834 | 4.61 | 0.0633 | 0.313 | 8.68 | -- | 14.9 | -0.0124 | 4.7 | 23.89 | 807 | 15.2 | -- |
| 357.37 | 0.88 | 4.44 | 0.732 | 0.21 | 3.67 | -- | -- | 0.259 | 22.7 | 26.31 | 881 | 10.4 | -- |
| 325.09 | 0.84 | 4.6 | 0.08 | -- | 9.02 | -- | 15.4 | -0.00264 | -- | 23.81 | 798 | 14.9 | -- |
| 478.3 | 1.03 | 4.57 | -0.00961 | 0.39 | -- | -0.296 | -- | -0.354 | 3.65 | -- | -- | -- | -- |
| 478.54 | 1.02 | 4.57 | -0.005 | 0.387 | -- | -- | -- | -0.353 | 3.47 | -- | -- | -- | -- |
| 358.73 | 0.882 | 4.44 | 0.728 | -- | 3.88 | -- | -- | 0.232 | -- | 26.32 | 865 | 11.1 | -- |
| 369.99 | 0.896 | 4.46 | -- | 0.209 | 3.41 | -- | -- | 0.129 | 23.9 | 26.09 | 871 | 10.6 | -- |
| 486.95 | 1.03 | 4.57 | 0.0113 | -- | -- | -- | -- | -0.342 | -- | -- | -- | -- | -- |
| 478.54 | 1.02 | 4.57 | -- | 0.387 | -- | -- | -- | -0.352 | 3.47 | -- | -- | -- | -- |
| 370.89 | 0.897 | 4.47 | -- | -- | 3.48 | -- | -- | 0.0917 | -- | 26.23 | 816 | 10.6 | -- |
| 486.95 | 1.03 | 4.57 | -- | -- | -- | -- | -- | -0.344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 322.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 8 | 326.61 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 12 | 328.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 30 | 333.97 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 50 | 338.14 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 55 | 338.62 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 56 | 339.00 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 60 | 339.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 67 | 339.78 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 78 | 341.02 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 114 | 344.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 9 |
| 125 | 345.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 156 | 347.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 178 | 348.22 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 195 | 348.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 205 | 349.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 229 | 350.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 254 | 350.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 324 | 352.08 | wind | 7 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 341 | 352.60 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 376 | 353.02 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 404 | 353.32 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 436 | 353.77 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 439 | 353.81 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 23 |
| 445 | 353.89 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 452 | 353.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 498 | 354.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 514 | 354.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 532 | 354.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 612 | 355.60 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 615 | 355.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 646 | 355.98 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 704 | 356.64 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 710 | 356.69 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 23 |
| 729 | 356.81 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 750 | 356.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 790 | 357.30 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 811 | 357.49 | wind | 9 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 821 | 357.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 827 | 357.61 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 845 | 357.74 | wind | 9 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 889 | 358.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 917 | 358.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 939 | 358.48 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 981 | 358.79 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |