Os09g0513600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).
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Os09g0513600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.64 | 0.277 | 8.46 | -0.498 | 0.522 | 0.522 | 0.198 | 1.62 | -0.31 | 8.47 | 24.6 | 23 | -- | -- |
| 35.89 | 0.279 | 8.48 | -0.674 | 0.511 | 0.652 | 0.269 | -- | -0.359 | 8.38 | 24.73 | 24 | -- | -- |
| 34.76 | 0.275 | 8.46 | -0.489 | 0.522 | 0.523 | -- | 1.66 | -0.309 | 8.42 | 24.6 | 22 | -- | -- |
| 36.04 | 0.28 | 8.48 | -0.692 | 0.519 | 0.678 | -- | -- | -0.367 | 8.22 | 24.7 | 21 | -- | -- |
| 48.41 | 0.326 | 8.47 | -0.444 | -- | 0.524 | -- | 1.61 | -0.321 | -- | 21.55 | 17 | -- | -- |
| 42.17 | 0.304 | 8.47 | -0.602 | 0.533 | -- | 0.457 | -- | -0.302 | 10.4 | -- | -- | -- | -- |
| 42.97 | 0.307 | 8.47 | -0.585 | 0.533 | -- | -- | -- | -0.301 | 10.2 | -- | -- | -- | -- |
| 50.35 | 0.332 | 8.49 | -0.678 | -- | 0.633 | -- | -- | -0.355 | -- | 24.7 | 21 | -- | -- |
| 48.13 | 0.325 | 8.46 | -- | 0.498 | 0.49 | -- | -- | -0.274 | 8.86 | 24.7 | 21 | -- | -- |
| 60.18 | 0.362 | 8.48 | -0.592 | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
| 51.99 | 0.337 | 8.45 | -- | 0.536 | -- | -- | -- | -0.236 | 10.3 | -- | -- | -- | -- |
| 62.23 | 0.369 | 8.47 | -- | -- | 0.537 | -- | -- | -0.274 | -- | 24.7 | 21 | -- | -- |
| 69.44 | 0.389 | 8.47 | -- | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.16 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 5 | 31.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 9 |
| 24 | 31.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 25 | 31.85 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 27 | 31.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 51 | 32.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 57 | 32.42 | humidity | 60.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 80 | 32.77 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 110 | 32.97 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 126 | 33.08 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 132 | 33.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 135 | 33.15 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 137 | 33.15 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 147 | 33.23 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 197 | 33.42 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 216 | 33.46 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 221 | 33.48 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 224 | 33.49 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 242 | 33.56 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 17 |
| 284 | 33.65 | radiation | 10.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 297 | 33.71 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 11 |
| 365 | 33.85 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 2 |
| 404 | 33.95 | humidity | 60.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 470 | 34.08 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 485 | 34.12 | temperature | 15.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 506 | 34.18 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 539 | 34.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 541 | 34.24 | radiation | 20.0 | 30 | < th | dose dependent | sin | 11 | NA |
| 542 | 34.24 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 543 | 34.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 557 | 34.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 562 | 34.27 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 569 | 34.28 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 575 | 34.29 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 14 |
| 596 | 34.33 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 619 | 34.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 621 | 34.37 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 622 | 34.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 624 | 34.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 625 | 34.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 631 | 34.37 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 6 |
| 672 | 34.44 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 11 |
| 694 | 34.46 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 723 | 34.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 733 | 34.51 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 743 | 34.52 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 22 | 22 |
| 746 | 34.53 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 12 |
| 768 | 34.55 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 773 | 34.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 796 | 34.59 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 19 |
| 806 | 34.59 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 811 | 34.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 816 | 34.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 829 | 34.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 858 | 34.65 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 895 | 34.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 898 | 34.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 924 | 34.71 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 949 | 34.73 | temperature | 25.0 | 30 | > th | dose dependent | no | NA | NA |
| 964 | 34.74 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |