Os09g0513400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0513400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.48 | 0.619 | 6.88 | -1.15 | 1.44 | -2.79 | 0.3 | -2.12 | 0.103 | 22.4 | 25.4 | 309 | -- | -- |
| 179.09 | 0.623 | 6.92 | -1.46 | 1.5 | -2.6 | 0.314 | -- | 0.0453 | 23 | 27.25 | 282 | -- | -- |
| 173.83 | 0.614 | 6.88 | -1.16 | 1.43 | -2.78 | -- | -2.09 | 0.101 | 22.4 | 25.4 | 314 | -- | -- |
| 178.97 | 0.623 | 6.91 | -1.51 | 1.47 | -2.62 | -- | -- | 0.00982 | 23 | 27.23 | 288 | -- | -- |
| 246.09 | 0.731 | 6.87 | -1.35 | -- | -3.16 | -- | -1.81 | -0.0174 | -- | 27.79 | 659 | -- | -- |
| 279.05 | 0.783 | 6.8 | -0.824 | 1.52 | -- | 0.248 | -- | 0.578 | 21.3 | -- | -- | -- | -- |
| 279.27 | 0.783 | 6.8 | -0.833 | 1.52 | -- | -- | -- | 0.578 | 21.3 | -- | -- | -- | -- |
| 248.65 | 0.734 | 6.9 | -1.68 | -- | -3.12 | -- | -- | -0.0773 | -- | 28.7 | 676 | -- | -- |
| 233.15 | 0.711 | 6.86 | -- | 1.41 | -2.01 | -- | -- | 0.277 | 22.4 | 26.62 | 310 | -- | -- |
| 414.13 | 0.951 | 6.76 | -0.825 | -- | -- | -- | -- | 0.572 | -- | -- | -- | -- | -- |
| 297.57 | 0.807 | 6.78 | -- | 1.52 | -- | -- | -- | 0.671 | 21.3 | -- | -- | -- | -- |
| 315.1 | 0.827 | 6.83 | -- | -- | -2.5 | -- | -- | 0.237 | -- | 29.4 | 654 | -- | -- |
| 432.1 | 0.97 | 6.74 | -- | -- | -- | -- | -- | 0.664 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 9 | 173.34 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 11 | 173.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 12 | 173.94 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 17 | 174.24 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 50 | 176.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 22 |
| 102 | 179.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 109 | 180.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 245 | 187.23 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 251 | 187.41 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 21 |
| 280 | 188.39 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 290 | 188.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 311 | 189.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 344 | 190.03 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 13 |
| 371 | 190.61 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 11 |
| 415 | 191.20 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 438 | 191.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 447 | 191.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 464 | 191.68 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 479 | 191.88 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 510 | 192.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 617 | 193.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 670 | 193.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 677 | 193.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 15 |
| 715 | 193.68 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 721 | 193.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 743 | 193.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 964 | 194.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 15 |