Os09g0511900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0511900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 1 protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.64	(0.06)	R²	:	0.157
β₁	:	-1.14	(0.22)	R²_dD	:	0.0519	R²_D	:	0.0132
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	2.75	(0.432)	R²_dE	:	0.0756	R²_E	:	0.0643
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.63	(0.128)	R²_dN8	:	0.0593	R²_N8	:	0.0359
σ	:	1.12
deviance	:	581.47
__

_____

C
peak time of C	:	--
E
wheather	:	radiation
threshold	:	30
memory length	:	9
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	13.1
open length of G	:	0.848

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
562.47	1.11	3.63	-1.13	0.0945	2.28	-2.11	4.93	-0.623	16	30.07	10	13.1	0.834
574.38	1.12	3.63	-1.13	0.082	2.71	-1.7	--	-0.617	16	30	10	13.1	0.837
574.63	1.12	3.64	-1.15	0.0983	2.27	--	3.92	-0.635	14.2	30.02	10	13.1	0.833
580.93	1.12	3.64	-1.14	0.0961	2.71	--	--	-0.633	13.9	30.01	9	13	0.867
575.15	1.12	3.64	-1.16	--	2.32	--	3.92	-0.635	--	30.05	10	13.1	0.835
623.88	1.17	3.65	-1.06	0.274	--	-1.35	--	-0.665	15.7	--	--	--	--
628.96	1.17	3.65	-1.08	0.272	--	--	--	-0.673	14.5	--	--	--	--
581.47	1.12	3.64	-1.14	--	2.75	--	--	-0.63	--	30	9	13.1	0.848
614.44	1.15	3.63	--	0.0799	2.55	--	--	-0.522	13.2	30.18	9	13	0.835
633.33	1.18	3.65	-1.09	--	--	--	--	-0.68	--	--	--	--	--
659.48	1.2	3.62	--	0.293	--	--	--	-0.553	14.5	--	--	--	--
615.09	1.16	3.62	--	--	2.59	--	--	-0.512	--	30.1	9	13.1	0.821
664.53	1.2	3.63	--	--	--	--	--	-0.559	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	567.69	radiation	30.0	10	> th	dose independent	rect.	13	1
3	569.02	radiation	30.0	90	> th	dose independent	rect.	12	2
25	575.16	humidity	90.0	30	< th	dose independent	rect.	13	2
35	577.47	temperature	15.0	10	> th	dose dependent	rect.	13	2
63	578.71	humidity	90.0	90	< th	dose dependent	rect.	12	2
68	578.88	humidity	90.0	10	< th	dose dependent	rect.	13	2
69	579.08	precipitation	0.1	90	< th	dose independent	rect.	13	1
70	579.08	precipitation	0.1	90	< th	dose dependent	rect.	13	1
82	580.01	radiation	1.0	10	> th	dose dependent	rect.	13	2
91	580.56	radiation	1.0	90	> th	dose dependent	rect.	12	2
112	581.06	wind	9.0	30	< th	dose independent	rect.	15	22
117	581.32	humidity	70.0	10	< th	dose independent	rect.	13	2
118	581.33	wind	7.0	10	< th	dose independent	rect.	13	2
124	581.49	temperature	10.0	10	> th	dose independent	rect.	13	2
126	581.49	atmosphere	995.0	10	> th	dose independent	rect.	13	2
127	581.49	atmosphere	1010.0	10	< th	dose independent	rect.	13	2
130	581.49	temperature	10.0	10	> th	dose independent	rect.	15	22
141	581.54	temperature	10.0	1440	> th	dose independent	rect.	14	2
145	581.54	temperature	10.0	1440	> th	dose independent	rect.	16	22
169	582.14	wind	9.0	90	< th	dose dependent	rect.	12	2
181	582.45	radiation	1.0	10	> th	dose independent	rect.	13	2
266	583.57	humidity	60.0	90	< th	dose dependent	rect.	12	1
269	583.60	precipitation	0.1	30	< th	dose independent	rect.	15	22
271	583.60	precipitation	0.1	30	< th	dose dependent	rect.	15	22
276	583.74	humidity	60.0	90	< th	dose independent	rect.	12	1
289	583.98	radiation	40.0	10	< th	dose independent	rect.	13	2
299	584.22	temperature	25.0	10	> th	dose independent	rect.	13	2
472	587.59	atmosphere	995.0	30	> th	dose dependent	rect.	13	2
502	588.39	atmosphere	1015.0	10	< th	dose dependent	rect.	13	2
512	588.66	radiation	30.0	30	< th	dose independent	rect.	10	17
520	588.82	radiation	10.0	10	> th	dose dependent	rect.	13	20
523	588.86	radiation	30.0	10	> th	dose independent	sin	13	NA
563	589.69	humidity	50.0	10	< th	dose dependent	rect.	13	5
582	589.71	radiation	30.0	30	< th	dose independent	rect.	10	6
662	590.03	atmosphere	995.0	30	> th	dose independent	rect.	15	22
702	590.51	humidity	50.0	10	< th	dose independent	rect.	13	5
874	591.56	radiation	20.0	90	< th	dose dependent	rect.	10	6
902	591.67	radiation	30.0	30	< th	dose independent	rect.	19	21
925	591.82	wind	3.0	30	> th	dose independent	rect.	13	2
978	592.56	radiation	30.0	10	< th	dose independent	rect.	4	23