Os09g0511000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0511000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.26 | 0.263 | 10.5 | -0.528 | 0.599 | 0.367 | 0.49 | 1.19 | 0.217 | 0.893 | 29.77 | 251 | -- | -- |
| 31.51 | 0.261 | 10.4 | -0.411 | 0.592 | 0.493 | 0.527 | -- | 0.233 | 0.862 | 29.8 | 256 | -- | -- |
| 32.24 | 0.264 | 10.5 | -0.572 | 0.596 | 0.35 | -- | 1.5 | 0.213 | 0.812 | 29.7 | 249 | -- | -- |
| 32.64 | 0.266 | 10.5 | -0.429 | 0.592 | 0.517 | -- | -- | 0.224 | 0.772 | 29.86 | 249 | -- | -- |
| 50.56 | 0.331 | 10.5 | -0.656 | -- | 0.487 | -- | 1.99 | 0.241 | -- | 28.9 | 172 | -- | -- |
| 37.15 | 0.286 | 10.4 | -0.484 | 0.694 | -- | 0.706 | -- | 0.246 | 1.84 | -- | -- | -- | -- |
| 39.07 | 0.293 | 10.4 | -0.506 | 0.693 | -- | -- | -- | 0.242 | 1.73 | -- | -- | -- | -- |
| 50.15 | 0.33 | 10.4 | -0.376 | -- | 0.555 | -- | -- | 0.3 | -- | 28.6 | 170 | -- | -- |
| 37.37 | 0.285 | 10.4 | -- | 0.576 | 0.583 | -- | -- | 0.267 | 0.609 | 29.87 | 249 | -- | -- |
| 68.26 | 0.386 | 10.4 | -0.478 | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
| 45.81 | 0.317 | 10.4 | -- | 0.684 | -- | -- | -- | 0.298 | 1.71 | -- | -- | -- | -- |
| 53.85 | 0.342 | 10.4 | -- | -- | 0.59 | -- | -- | 0.343 | -- | 28.55 | 171 | -- | -- |
| 74.28 | 0.402 | 10.4 | -- | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.37 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 22 |
| 4 | 30.00 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 9 |
| 23 | 30.61 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 22 |
| 39 | 30.98 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 49 | 31.09 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 23 |
| 50 | 31.10 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 55 | 31.20 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 10 |
| 63 | 31.28 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 65 | 31.31 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 66 | 31.33 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 75 | 31.40 | temperature | 30 | 270 | > th | dose independent | sin | 0 | NA |
| 77 | 31.40 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 81 | 31.42 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 88 | 31.47 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 89 | 31.49 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 90 | 31.49 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |
| 182 | 31.50 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 9 |
| 215 | 31.55 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 16 |
| 220 | 31.57 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 250 | 31.66 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 16 |
| 253 | 31.67 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 19 |
| 257 | 31.69 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 23 |
| 265 | 31.72 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 271 | 31.75 | radiation | 30 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 279 | 31.78 | radiation | 20 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 320 | 31.85 | temperature | 30 | 720 | < th | dose independent | sin | 6 | NA |
| 323 | 31.85 | radiation | 30 | 720 | < th | dose independent | rect. | 17 | 17 |
| 333 | 31.90 | radiation | 30 | 720 | < th | dose independent | rect. | 24 | 10 |
| 340 | 31.92 | radiation | 20 | 720 | > th | dose independent | rect. | 7 | 2 |
| 384 | 31.96 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 389 | 31.97 | radiation | 30 | 720 | > th | dose independent | rect. | 16 | 17 |
| 395 | 31.99 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 473 | 32.09 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 2 |
| 476 | 32.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 483 | 32.11 | humidity | 60 | 270 | > th | dose independent | rect. | 7 | 22 |
| 642 | 32.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 650 | 32.31 | temperature | 30 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 661 | 32.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 704 | 32.40 | temperature | 10 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 733 | 32.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 765 | 32.52 | radiation | 40 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 782 | 32.55 | radiation | 40 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 787 | 32.56 | radiation | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 803 | 32.58 | temperature | 30 | 270 | > th | dose dependent | sin | 3 | NA |
| 807 | 32.58 | radiation | 40 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 810 | 32.59 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 20 |
| 837 | 32.62 | humidity | 60 | 720 | < th | dose independent | rect. | 12 | 1 |
| 851 | 32.63 | temperature | 10 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 865 | 32.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 870 | 32.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 886 | 32.69 | humidity | 60 | 720 | < th | dose independent | rect. | 12 | 3 |
| 887 | 32.69 | radiation | 30 | 720 | < th | dose independent | rect. | 7 | 4 |
| 968 | 32.77 | humidity | 60 | 720 | > th | dose independent | rect. | 24 | 14 |
| 977 | 32.77 | humidity | 50 | 270 | > th | dose dependent | rect. | 9 | 18 |