Os09g0510900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat 2 containing protein.
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Os09g0510900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.25 | 0.352 | 8.19 | 2.06 | 1.54 | -0.709 | -1.65 | 3.39 | 0.789 | 19 | 23.7 | 570 | -- | -- |
| 60.99 | 0.364 | 8.25 | 1.47 | 1.34 | -0.267 | -1.17 | -- | 0.656 | 19.2 | 22.45 | 2149 | -- | -- |
| 61.43 | 0.365 | 8.22 | 1.86 | 1.55 | -0.766 | -- | 2.69 | 0.683 | 19.1 | 26.13 | 648 | -- | -- |
| 62.71 | 0.369 | 8.26 | 1.59 | 1.45 | -0.442 | -- | -- | 0.619 | 19 | 26.16 | 649 | -- | -- |
| 138.14 | 0.547 | 8.29 | 0.97 | -- | 0.907 | -- | -1.84 | 0.401 | -- | 24.5 | 499 | -- | -- |
| 63.01 | 0.372 | 8.27 | 1.39 | 1.3 | -- | -1.16 | -- | 0.568 | 19.1 | -- | -- | -- | -- |
| 66.53 | 0.382 | 8.27 | 1.41 | 1.3 | -- | -- | -- | 0.565 | 19.1 | -- | -- | -- | -- |
| 139.31 | 0.55 | 8.26 | 1.25 | -- | 0.751 | -- | -- | 0.472 | -- | 24.4 | 483 | -- | -- |
| 118.38 | 0.507 | 8.31 | -- | 1.34 | -0.157 | -- | -- | 0.403 | 19.1 | 28.5 | 550 | -- | -- |
| 155.6 | 0.583 | 8.24 | 1.39 | -- | -- | -- | -- | 0.542 | -- | -- | -- | -- | -- |
| 118.91 | 0.51 | 8.3 | -- | 1.28 | -- | -- | -- | 0.408 | 19.2 | -- | -- | -- | -- |
| 179.18 | 0.623 | 8.29 | -- | -- | 0.954 | -- | -- | 0.309 | -- | 24.1 | 510 | -- | -- |
| 206.21 | 0.67 | 8.27 | -- | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.74 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 3 | 52.89 | humidity | 90 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 6 | 53.03 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 10 | 53.22 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |
| 11 | 53.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 13 | 53.25 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 14 | 53.28 | humidity | 80 | 43200 | < th | dose independent | sin | 8 | NA |
| 21 | 53.34 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 22 | 53.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 23 | 53.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 30 | 53.38 | humidity | 80 | 43200 | > th | dose independent | sin | 8 | NA |
| 36 | 53.40 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 42 | 53.41 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 43 | 53.42 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 59 | 53.47 | wind | 9 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 61 | 53.48 | wind | 1 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 66 | 53.49 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 68 | 53.51 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 85 | 53.57 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 96 | 53.60 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 107 | 53.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 145 | 53.76 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 148 | 53.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 182 | 53.87 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 207 | 53.91 | humidity | 90 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 242 | 54.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 252 | 54.03 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 254 | 54.03 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 259 | 54.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 261 | 54.04 | wind | 1 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 269 | 54.05 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 274 | 54.06 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 276 | 54.06 | wind | 9 | 43200 | < th | dose dependent | rect. | 15 | 6 |
| 277 | 54.06 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 12 |
| 289 | 54.08 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 307 | 54.10 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 9 |
| 353 | 54.15 | wind | 5 | 43200 | < th | dose dependent | sin | 21 | NA |
| 365 | 54.16 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 411 | 54.20 | wind | 3 | 43200 | > th | dose independent | sin | 21 | NA |
| 438 | 54.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 9 |
| 536 | 54.28 | wind | 3 | 43200 | < th | dose independent | sin | 22 | NA |
| 545 | 54.28 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 559 | 54.29 | wind | 3 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 604 | 54.31 | atmosphere | 995 | 43200 | > th | dose dependent | sin | 1 | NA |
| 627 | 54.32 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 635 | 54.32 | atmosphere | 1015 | 43200 | < th | dose dependent | sin | 1 | NA |
| 637 | 54.32 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 713 | 54.35 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 801 | 54.37 | wind | 3 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 898 | 54.39 | humidity | 50 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 902 | 54.39 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 15 | 1 |