Os09g0510000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0510000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.62 | 0.223 | 11.2 | -0.13 | 0.16 | -0.558 | -0.0453 | 0.568 | 0.435 | 22.1 | 19.29 | 1694 | -- | -- |
| 23.05 | 0.224 | 11.2 | -0.0944 | 0.156 | -0.696 | -0.0808 | -- | 0.449 | 22.3 | 19.1 | 1680 | -- | -- |
| 22.59 | 0.221 | 11.2 | -0.129 | 0.162 | -0.563 | -- | 0.592 | 0.437 | 22.1 | 19.14 | 1693 | -- | -- |
| 22.87 | 0.223 | 11.2 | -0.0876 | 0.17 | -0.863 | -- | -- | 0.444 | 21.9 | 18.5 | 1679 | -- | -- |
| 24.11 | 0.229 | 11.2 | -0.128 | -- | -0.558 | -- | 0.518 | 0.435 | -- | 19.12 | 1862 | -- | -- |
| 29.35 | 0.254 | 11.2 | 0.183 | 0.158 | -- | 0.035 | -- | 0.559 | 22 | -- | -- | -- | -- |
| 29.35 | 0.254 | 11.2 | 0.182 | 0.157 | -- | -- | -- | 0.559 | 22 | -- | -- | -- | -- |
| 24.39 | 0.23 | 11.2 | -0.0925 | -- | -0.803 | -- | -- | 0.449 | -- | 18.3 | 1908 | -- | -- |
| 22.96 | 0.223 | 11.2 | -- | 0.164 | -0.849 | -- | -- | 0.463 | 21.9 | 18.4 | 1678 | -- | -- |
| 30.85 | 0.26 | 11.2 | 0.184 | -- | -- | -- | -- | 0.559 | -- | -- | -- | -- | -- |
| 30.23 | 0.257 | 11.2 | -- | 0.158 | -- | -- | -- | 0.538 | 22.1 | -- | -- | -- | -- |
| 24.53 | 0.231 | 11.2 | -- | -- | -0.79 | -- | -- | 0.468 | -- | 18.3 | 1791 | -- | -- |
| 31.74 | 0.263 | 11.2 | -- | -- | -- | -- | -- | 0.538 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.68 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 23 |
| 2 | 22.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 3 | 22.83 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 21 |
| 6 | 22.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 10 | 23.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 11 | 23.06 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 13 | 23.08 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 18 | 23.09 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 25 | 23.11 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 29 | 23.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 32 | 23.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 33 | 23.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 43 | 23.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 45 | 23.23 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 51 | 23.25 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 131 | 23.36 | temperature | 20 | 1440 | < th | dose dependent | sin | 10 | NA |
| 165 | 23.38 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 181 | 23.39 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 193 | 23.40 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 211 | 23.41 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 234 | 23.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 235 | 23.42 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 311 | 23.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 325 | 23.47 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 373 | 23.49 | temperature | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 383 | 23.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 11 |
| 390 | 23.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 401 | 23.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 435 | 23.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 10 |
| 491 | 23.53 | temperature | 20 | 1440 | > th | dose independent | sin | 3 | NA |
| 493 | 23.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 14 |
| 500 | 23.53 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 505 | 23.53 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 533 | 23.54 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 565 | 23.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 568 | 23.55 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 682 | 23.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 708 | 23.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 717 | 23.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 720 | 23.60 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 774 | 23.61 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 796 | 23.62 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 821 | 23.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 851 | 23.64 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 863 | 23.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 869 | 23.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 871 | 23.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 948 | 23.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 981 | 23.67 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 983 | 23.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |