FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0509700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zinc-finger protein C60910-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.048) R2 : 0.799
β1 : 2.06 (0.176) R2dD : 0.0637 R2D : 0.0172
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.83 (0.117) R2dE : 0.763 R2E : 0.728
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.575 (0.103) R2dN8 : 0.0183 R2N8 : 0.00213
σ : 0.898
deviance : 372.04
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 16.9
memory length : 346
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.8
open length of G : 16

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
353.87 0.884 4.41 1.99 1.2 -3.64 3.93 1.72 0.516 18.6 16.6 269 19 16.3
357.3 0.88 4.41 1.98 1.06 -3.86 2.41 -- 0.54 19.1 16.77 272 18.8 16.3
377.71 0.905 4.38 2.11 1.39 -3.49 -- 0.446 0.619 18.6 17 258 19 16.3
371.78 0.898 4.41 1.98 1.11 -3.82 -- -- 0.549 18.7 16.84 280 18.8 16.4
368.19 0.894 4.35 2.11 -- -4.86 -- -1.04 0.604 -- 16.61 352 18.8 16.1
588.41 1.14 4.47 1.71 4.75 -- 1.95 -- 0.605 17.8 -- -- -- --
597.65 1.14 4.46 1.7 4.77 -- -- -- 0.614 17.8 -- -- -- --
372.04 0.898 4.37 2.06 -- -4.83 -- -- 0.575 -- 16.9 346 18.8 16
468.69 1.01 4.47 -- 1.58 -3.36 -- -- 0.311 18 16.73 273 18.8 16.8
1775.66 1.97 4.39 1.55 -- -- -- -- 0.501 -- -- -- -- --
673.39 1.21 4.5 -- 4.74 -- -- -- 0.425 17.8 -- -- -- --
482.83 1.02 4.42 -- -- -4.66 -- -- 0.371 -- 16.48 342 18.9 16
1838.75 2 4.43 -- -- -- -- -- 0.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 364.12 temperature 10.0 270 > th dose dependent rect. 19 16
2 369.04 temperature 10.0 270 > th dose dependent rect. 18 18
6 374.97 temperature 15.0 270 > th dose independent rect. 19 16
8 377.17 temperature 15.0 10 > th dose dependent rect. 20 18
12 382.64 temperature 15.0 270 > th dose independent rect. 18 18
15 384.19 temperature 15.0 270 > th dose independent rect. 8 15
26 389.61 temperature 20.0 270 > th dose independent rect. 6 7
35 392.17 temperature 15.0 270 > th dose independent rect. 17 20
48 396.49 temperature 10.0 270 > th dose dependent rect. 5 7
67 404.84 temperature 15.0 270 > th dose independent rect. 17 8
110 416.23 radiation 20.0 43200 < th dose dependent rect. 20 7
115 417.18 temperature 15.0 90 > th dose independent rect. 19 6
117 417.66 temperature 15.0 10 > th dose dependent rect. 8 6
122 418.18 temperature 30.0 10 < th dose dependent rect. 2 17
134 420.01 atmosphere 1010.0 90 < th dose independent rect. 19 6
136 420.26 radiation 1.0 270 > th dose independent rect. 5 8
137 420.26 atmosphere 1015.0 90 < th dose dependent rect. 19 6
150 420.48 temperature 10.0 10 > th dose dependent rect. 8 18
154 421.22 temperature 10.0 90 > th dose dependent rect. 8 17
157 421.54 wind 7.0 90 < th dose independent rect. 19 18
158 421.73 atmosphere 995.0 270 > th dose dependent rect. 12 6
163 422.11 temperature 10.0 270 > th dose dependent rect. 18 6
170 423.27 wind 7.0 270 < th dose independent rect. 19 16
175 423.88 atmosphere 995.0 270 > th dose dependent rect. 11 8
179 424.19 atmosphere 995.0 270 > th dose independent rect. 11 8
184 424.97 atmosphere 995.0 270 > th dose independent rect. 1 16
198 426.13 humidity 50.0 270 > th dose independent rect. 19 16
207 426.84 wind 1.0 270 > th dose independent rect. 11 8
208 426.89 temperature 10.0 270 > th dose independent rect. 11 8
209 426.89 atmosphere 1015.0 270 < th dose independent rect. 11 8
211 426.89 atmosphere 995.0 270 > th dose independent rect. 19 16
215 427.26 radiation 20.0 270 < th dose independent rect. 17 8
218 427.26 temperature 10.0 270 > th dose independent rect. 1 16
219 427.26 atmosphere 1015.0 270 < th dose independent rect. 1 16
227 427.70 atmosphere 1010.0 10 < th dose independent rect. 20 6
230 427.84 wind 7.0 10 < th dose independent rect. 20 18
233 428.05 humidity 50.0 270 > th dose independent rect. 17 8
240 428.33 radiation 40.0 270 < th dose dependent rect. 17 8
243 428.45 wind 9.0 270 < th dose independent rect. 17 8
256 429.05 precipitation 0.1 270 < th dose independent rect. 19 16
257 429.05 precipitation 0.1 270 < th dose dependent rect. 19 16
260 429.48 precipitation 0.1 270 < th dose independent rect. 11 8
261 429.48 precipitation 0.1 270 < th dose dependent rect. 11 8
282 430.35 atmosphere 995.0 10 > th dose dependent rect. 13 7
284 430.58 temperature 20.0 10 > th dose independent rect. 8 6
288 430.90 wind 9.0 270 < th dose independent rect. 11 8
290 430.97 temperature 15.0 10 > th dose dependent rect. 6 8
296 431.42 temperature 15.0 10 > th dose independent rect. 20 6
315 432.41 atmosphere 995.0 270 > th dose dependent rect. 13 4
322 432.58 wind 9.0 270 < th dose independent rect. 12 6
327 432.74 temperature 15.0 10 > th dose independent rect. 20 18
335 433.21 wind 9.0 270 < th dose independent rect. 1 16
336 433.24 temperature 10.0 10 > th dose dependent rect. 20 6
343 433.47 precipitation 0.1 270 < th dose independent rect. 17 8
345 433.47 precipitation 0.1 270 < th dose dependent rect. 17 8
348 433.59 atmosphere 1010.0 270 < th dose independent rect. 19 4
350 433.65 wind 7.0 270 < th dose independent rect. 6 7
353 433.68 precipitation 0.1 270 < th dose independent rect. 1 16
354 433.68 precipitation 0.1 270 < th dose dependent rect. 1 16
360 434.15 radiation 40.0 10 < th dose independent rect. 13 7
376 434.95 temperature 10.0 270 > th dose dependent rect. 19 4
384 435.26 wind 9.0 270 < th dose independent rect. 17 20
391 435.61 atmosphere 995.0 270 > th dose independent rect. 13 4
393 435.62 radiation 20.0 10 < th dose dependent rect. 2 17
397 435.83 radiation 40.0 270 < th dose dependent rect. 23 9
412 436.80 radiation 40.0 90 < th dose independent rect. 13 6
423 437.12 wind 9.0 270 < th dose independent rect. 7 16
429 437.20 atmosphere 995.0 270 > th dose independent rect. 13 17
469 438.15 precipitation 0.1 270 < th dose independent rect. 17 20
470 438.15 precipitation 0.1 270 < th dose dependent rect. 17 20
472 438.19 humidity 50.0 10 > th dose dependent rect. 2 17
477 438.31 atmosphere 995.0 270 > th dose independent rect. 17 8
479 438.34 temperature 10.0 270 > th dose independent rect. 23 8
480 438.34 temperature 30.0 270 < th dose independent rect. 23 8
481 438.34 humidity 50.0 270 > th dose independent rect. 23 8
483 438.34 atmosphere 995.0 270 > th dose independent rect. 23 8
484 438.34 radiation 40.0 270 < th dose independent rect. 23 8
489 438.42 wind 9.0 270 < th dose independent rect. 23 8
513 438.81 temperature 10.0 270 > th dose independent rect. 13 4
515 438.81 atmosphere 1010.0 270 < th dose independent rect. 13 4
534 439.23 radiation 1.0 270 < th dose dependent sin 4 NA
535 439.24 humidity 90.0 10 < th dose independent rect. 8 6
539 439.32 wind 9.0 270 < th dose independent rect. 13 4
546 439.54 wind 1.0 270 > th dose independent rect. 13 4
547 439.54 wind 1.0 270 > th dose independent rect. 17 8
548 439.54 atmosphere 1015.0 270 < th dose independent rect. 7 16
552 439.62 atmosphere 1015.0 10 < th dose dependent rect. 20 6
559 439.78 precipitation 0.1 270 < th dose independent rect. 13 4
560 439.78 precipitation 0.1 270 < th dose dependent rect. 13 4
570 439.92 temperature 30.0 90 < th dose independent rect. 19 7
571 439.92 humidity 50.0 90 > th dose independent rect. 19 7
573 439.92 atmosphere 995.0 90 > th dose independent rect. 19 7
574 439.92 radiation 1.0 90 < th dose independent rect. 19 7
581 439.92 radiation 10.0 90 < th dose dependent rect. 19 7
591 440.05 precipitation 0.1 270 < th dose independent rect. 6 7
592 440.05 precipitation 0.1 270 < th dose dependent rect. 6 7
599 440.26 humidity 50.0 270 > th dose independent rect. 17 20
604 440.35 wind 9.0 90 < th dose independent rect. 19 7
607 440.40 atmosphere 1015.0 270 < th dose independent rect. 19 17
650 440.80 atmosphere 1000.0 10 > th dose independent rect. 13 7
664 441.03 atmosphere 995.0 270 > th dose independent rect. 6 7
665 441.03 atmosphere 1015.0 270 < th dose independent rect. 6 7
666 441.03 temperature 10.0 270 > th dose independent rect. 13 17
671 441.08 radiation 1.0 270 < th dose independent sin 5 NA
674 441.13 humidity 50.0 270 > th dose independent rect. 6 7
678 441.19 wind 9.0 270 < th dose independent rect. 13 17
692 441.58 humidity 90.0 30 < th dose independent rect. 20 18
705 441.74 wind 9.0 270 < th dose dependent rect. 6 7
707 441.82 precipitation 0.1 270 < th dose independent rect. 23 8
708 441.82 precipitation 0.1 270 < th dose dependent rect. 23 8
713 441.88 humidity 70.0 10 > th dose independent rect. 19 7
787 442.95 precipitation 0.1 270 < th dose independent rect. 7 16
788 442.95 precipitation 0.1 270 < th dose dependent rect. 7 16
815 443.43 precipitation 0.1 90 < th dose independent rect. 19 7
816 443.43 precipitation 0.1 90 < th dose dependent rect. 19 7
817 443.44 radiation 1.0 1440 < th dose dependent rect. 20 7
844 444.34 precipitation 0.1 270 < th dose independent rect. 13 17
845 444.34 precipitation 0.1 270 < th dose dependent rect. 13 17
885 445.16 radiation 40.0 10 < th dose dependent rect. 13 19
938 445.85 temperature 10.0 10 > th dose independent rect. 14 6
940 445.85 atmosphere 1010.0 10 < th dose independent rect. 14 6
943 445.85 atmosphere 995.0 10 > th dose independent rect. 20 18
948 445.93 atmosphere 1015.0 270 < th dose independent rect. 23 8
961 446.04 temperature 10.0 1440 > th dose independent rect. 20 7
964 446.04 temperature 30.0 1440 < th dose independent rect. 20 7
968 446.04 humidity 50.0 1440 > th dose independent rect. 20 7
974 446.04 atmosphere 995.0 1440 > th dose independent rect. 20 7
975 446.04 radiation 1.0 1440 < th dose independent rect. 20 7
995 446.04 temperature 10.0 1440 > th dose independent rect. 3 17