Os09g0508500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0508500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 380.6 | 0.917 | 6.76 | -2.56 | 2.58 | -2.19 | -1.85 | 1.09 | -0.785 | 5.31 | 28.8 | 648 | -- | -- |
| 380.39 | 0.908 | 6.74 | -2.43 | 2.58 | -2.09 | -1.72 | -- | -0.763 | 5.33 | 28.58 | 649 | -- | -- |
| 386.66 | 0.916 | 6.73 | -2.3 | 2.69 | -2 | -- | -0.94 | -0.763 | 5.22 | 28.41 | 599 | -- | -- |
| 385.95 | 0.915 | 6.75 | -2.36 | 2.76 | -2.03 | -- | -- | -0.748 | 4.97 | 28.9 | 488 | -- | -- |
| 548.76 | 1.09 | 6.78 | -2.63 | -- | -1.57 | -- | -0.816 | -0.824 | -- | 26.8 | 2657 | -- | -- |
| 473.14 | 1.02 | 6.72 | -2.04 | 1.72 | -- | -1.84 | -- | -0.568 | 4.65 | -- | -- | -- | -- |
| 481.42 | 1.03 | 6.72 | -2.03 | 1.7 | -- | -- | -- | -0.559 | 4.42 | -- | -- | -- | -- |
| 529.33 | 1.07 | 6.8 | -2.51 | -- | -1.6 | -- | -- | -0.827 | -- | 27.91 | 1259 | -- | -- |
| 529.6 | 1.07 | 6.67 | -- | 2.47 | -1.63 | -- | -- | -0.439 | 4.93 | 29.09 | 476 | -- | -- |
| 636.23 | 1.18 | 6.73 | -1.96 | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
| 590.08 | 1.14 | 6.67 | -- | 1.66 | -- | -- | -- | -0.333 | 4.44 | -- | -- | -- | -- |
| 678.92 | 1.21 | 6.71 | -- | -- | -1.15 | -- | -- | -0.402 | -- | 28.8 | 1264 | -- | -- |
| 737.95 | 1.27 | 6.68 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 371.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 5 | 373.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 20 | 376.02 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 23 | 376.58 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 28 | 376.88 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 16 |
| 40 | 377.81 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 45 | 377.99 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 48 | 378.14 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 68 | 379.90 | radiation | 40 | 1440 | < th | dose dependent | sin | 12 | NA |
| 96 | 381.32 | radiation | 10 | 1440 | < th | dose independent | sin | 12 | NA |
| 118 | 382.24 | temperature | 25 | 270 | > th | dose dependent | sin | 18 | NA |
| 133 | 382.59 | radiation | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 142 | 382.98 | radiation | 20 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 143 | 383.01 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 8 |
| 168 | 383.64 | temperature | 15 | 30 | > th | dose dependent | rect. | 14 | 19 |
| 215 | 384.85 | radiation | 30 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 222 | 385.03 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 258 | 386.05 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 259 | 386.06 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 263 | 386.15 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 284 | 386.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 286 | 386.41 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 293 | 386.52 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 308 | 386.75 | temperature | 25 | 720 | > th | dose dependent | sin | 0 | NA |
| 347 | 387.42 | radiation | 1 | 270 | > th | dose independent | sin | 16 | NA |
| 351 | 387.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 364 | 387.56 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 406 | 388.01 | radiation | 1 | 270 | < th | dose independent | sin | 16 | NA |
| 407 | 388.01 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 419 | 388.13 | temperature | 25 | 30 | > th | dose dependent | sin | 14 | NA |
| 439 | 388.44 | radiation | 1 | 270 | < th | dose dependent | sin | 16 | NA |
| 440 | 388.46 | radiation | 30 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 449 | 388.57 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 456 | 388.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 463 | 388.64 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 535 | 389.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 541 | 389.48 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 14 |
| 550 | 389.65 | radiation | 40 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 578 | 389.78 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 621 | 390.23 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 628 | 390.27 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 660 | 390.54 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 692 | 390.77 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 748 | 391.16 | radiation | 10 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 772 | 391.33 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 778 | 391.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 803 | 391.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 867 | 391.92 | radiation | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 986 | 392.81 | humidity | 70 | 270 | > th | dose independent | rect. | 15 | 10 |