Os09g0508300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os09g0508300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.41 | 0.227 | 12.2 | 0.93 | 0.692 | 0.947 | 0.204 | 1.2 | 0.344 | 23.8 | 0.8299 | 1442 | -- | -- |
| 24.29 | 0.23 | 12.2 | 1.05 | 0.699 | 0.796 | 0.193 | -- | 0.393 | 23.8 | 2.039 | 1451 | -- | -- |
| 23.55 | 0.226 | 12.2 | 0.916 | 0.686 | 0.962 | -- | 1.27 | 0.337 | 23.8 | 0.83 | 1450 | -- | -- |
| 24.12 | 0.229 | 12.2 | 0.998 | 0.635 | 0.753 | -- | -- | 0.387 | 23.7 | 2.12 | 1480 | -- | -- |
| 32.15 | 0.264 | 12.2 | 0.988 | -- | 1.49 | -- | 1.33 | 0.369 | -- | 1.128 | 1615 | -- | -- |
| 29.36 | 0.254 | 12.2 | 0.88 | 0.694 | -- | 0.135 | -- | 0.271 | 23.7 | -- | -- | -- | -- |
| 29.44 | 0.254 | 12.2 | 0.874 | 0.693 | -- | -- | -- | 0.27 | 23.7 | -- | -- | -- | -- |
| 32.33 | 0.266 | 12.2 | 0.904 | -- | 0.503 | -- | -- | 0.29 | -- | 2.12 | 1480 | -- | -- |
| 44.31 | 0.31 | 12.2 | -- | 0.668 | 0.482 | -- | -- | 0.314 | 23.7 | 10 | 7317 | -- | -- |
| 59.69 | 0.361 | 12.2 | 0.894 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 49.59 | 0.329 | 12.2 | -- | 0.704 | -- | -- | -- | 0.173 | 23.8 | -- | -- | -- | -- |
| 50.82 | 0.333 | 12.2 | -- | -- | 0.557 | -- | -- | 0.183 | -- | 10 | 7317 | -- | -- |
| 80.79 | 0.42 | 12.2 | -- | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 6 | 20.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 9 | 20.96 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 13 | 21.00 | temperature | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 30 | 21.23 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 56 | 21.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 57 | 21.53 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 60 | 21.56 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 134 | 22.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 156 | 22.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 161 | 22.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 173 | 22.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 174 | 22.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 188 | 22.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 352 | 22.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 354 | 22.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 420 | 22.91 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 614 | 23.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 616 | 23.11 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 9 |
| 626 | 23.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 734 | 23.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 750 | 23.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 790 | 23.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 839 | 23.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 865 | 23.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 872 | 23.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 918 | 23.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 956 | 23.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 15 |
| 979 | 23.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 1000 | 23.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 19 |