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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0507500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 55 precursor (EC 1.11.1.7) (Atperox P55) (ATP20a).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0212) R2 : 1.45e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00364 (0.0447) R2dN8 : 1.87e-05 R2N8 : 1.45e-05
σ : 0.4
deviance : 73.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.15 0.396 3.12 0.164 0.0884 0.16 0.261 0.887 -0.000285 7.85 85.94 6390 -- --
72.15 0.396 3.12 0.137 0.0948 0.2 0.162 -- -0.0302 7.53 87 8028 -- --
71.19 0.393 3.12 0.17 0.0796 0.162 -- 0.885 -0.000907 7.54 86.9 5858 -- --
72.18 0.396 3.12 0.141 0.0983 0.2 -- -- -0.0314 6.69 87 7998 -- --
71.52 0.394 3.12 0.173 -- 0.164 -- 0.876 0.000708 -- 87 5836 -- --
72.74 0.4 3.11 0.112 0.0802 -- 0.155 -- 0.0155 7.32 -- -- -- --
72.77 0.399 3.11 0.114 0.0856 -- -- -- 0.0147 6.21 -- -- -- --
72.63 0.397 3.12 0.142 -- 0.205 -- -- -0.0216 -- 88 6991 -- --
72.68 0.397 3.12 -- 0.102 0.167 -- -- -0.0358 6.42 86 7991 -- --
73.15 0.4 3.11 0.117 -- -- -- -- 0.0166 -- -- -- -- --
73.11 0.4 3.11 -- 0.0873 -- -- -- 0.00197 6.15 -- -- -- --
73.11 0.398 3.12 -- -- 0.175 -- -- -0.0268 -- 87 6966 -- --
73.51 0.4 3.11 -- -- -- -- -- 0.00364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.78 radiation 10.0 43200 < th dose dependent rect. 23 1
3 66.87 atmosphere 1000.0 30 > th dose independent rect. 23 23
11 67.11 temperature 25.0 10 > th dose dependent rect. 22 1
18 67.14 wind 9.0 1440 < th dose independent rect. 23 1
19 67.14 temperature 25.0 10 > th dose independent rect. 22 1
21 67.14 temperature 10.0 1440 > th dose independent rect. 23 1
24 67.14 temperature 30.0 1440 < th dose independent rect. 23 1
28 67.14 humidity 50.0 1440 > th dose independent rect. 23 1
38 67.14 atmosphere 995.0 1440 > th dose independent rect. 23 1
39 67.14 radiation 1.0 1440 < th dose independent rect. 23 1
59 67.14 temperature 10.0 1440 > th dose independent rect. 24 23
69 67.18 wind 3.0 30 < th dose independent rect. 22 1
70 67.18 atmosphere 1005.0 30 > th dose dependent rect. 22 1
71 67.19 humidity 80.0 30 > th dose independent rect. 22 1
74 67.20 humidity 90.0 30 < th dose independent rect. 22 1
76 67.21 wind 1.0 30 > th dose independent rect. 22 1
77 67.21 atmosphere 1005.0 30 > th dose independent rect. 22 1
82 67.22 wind 5.0 30 < th dose dependent rect. 22 1
86 67.23 temperature 10.0 30 > th dose independent rect. 22 1
88 67.23 temperature 30.0 30 < th dose independent rect. 22 1
89 67.23 humidity 50.0 30 > th dose independent rect. 22 1
92 67.23 atmosphere 995.0 30 > th dose independent rect. 22 1
94 67.23 atmosphere 1010.0 30 < th dose independent rect. 22 1
96 67.23 radiation 1.0 30 < th dose independent rect. 22 1
101 67.23 precipitation 0.1 30 < th dose independent rect. 22 1
102 67.23 temperature 10.0 30 > th dose independent rect. 23 23
104 67.23 humidity 50.0 30 > th dose dependent rect. 22 1
107 67.23 radiation 1.0 30 < th dose dependent rect. 22 1
112 67.23 precipitation 0.1 30 < th dose dependent rect. 22 1
116 67.29 precipitation 0.1 1440 < th dose independent rect. 23 1
117 67.29 humidity 90.0 30 < th dose dependent rect. 22 1
118 67.29 atmosphere 1015.0 30 < th dose dependent rect. 22 1
119 67.29 precipitation 0.1 1440 < th dose dependent rect. 23 1
121 67.32 precipitation 0.1 30 < th dose independent rect. 23 23
122 67.32 wind 1.0 30 > th dose dependent rect. 22 1
123 67.32 precipitation 0.1 30 < th dose dependent rect. 23 23
129 67.37 temperature 30.0 30 < th dose dependent rect. 22 1
179 67.75 wind 9.0 30 < th dose independent rect. 23 23
190 68.19 humidity 50.0 30 > th dose independent rect. 23 23
195 68.40 precipitation 0.1 720 < th dose independent rect. 15 8
197 68.40 precipitation 0.1 720 < th dose dependent rect. 15 8
198 68.44 atmosphere 995.0 720 > th dose independent rect. 23 16
200 68.47 wind 1.0 30 > th dose independent rect. 23 23
202 68.50 humidity 50.0 720 > th dose independent rect. 3 8
204 68.59 temperature 10.0 720 > th dose independent rect. 15 8
205 68.59 temperature 10.0 720 > th dose independent rect. 23 16
207 68.61 temperature 10.0 720 > th dose independent rect. 3 8
208 68.61 atmosphere 995.0 720 > th dose independent rect. 3 8
209 68.61 temperature 10.0 720 > th dose independent rect. 11 16
211 68.62 atmosphere 995.0 720 > th dose independent rect. 11 16
212 68.65 atmosphere 995.0 720 > th dose independent rect. 15 8
214 68.76 precipitation 0.1 720 < th dose independent rect. 11 16
215 68.76 precipitation 0.1 720 < th dose dependent rect. 11 16
217 68.81 wind 9.0 720 < th dose independent rect. 3 8
231 69.39 precipitation 0.1 720 < th dose independent rect. 3 8
232 69.39 precipitation 0.1 720 < th dose dependent rect. 3 8
234 69.45 radiation 40.0 720 < th dose independent rect. 15 8
236 69.46 atmosphere 1015.0 720 < th dose independent rect. 3 8
237 69.56 precipitation 0.1 720 < th dose independent rect. 23 16
238 69.56 precipitation 0.1 720 < th dose dependent rect. 23 16
245 69.92 temperature 30.0 30 < th dose independent rect. 23 23
246 69.94 atmosphere 1015.0 30 < th dose independent rect. 23 23
247 69.97 wind 9.0 720 < th dose independent rect. 15 8
250 69.99 atmosphere 1005.0 90 > th dose dependent rect. 2 1
258 70.11 atmosphere 1005.0 10 > th dose dependent rect. 2 2
260 70.13 temperature 25.0 90 > th dose independent rect. 21 6
264 70.19 wind 1.0 720 > th dose independent rect. 15 8
267 70.21 temperature 10.0 30 > th dose dependent rect. 23 23
268 70.22 temperature 25.0 90 > th dose dependent rect. 21 6
277 70.29 temperature 25.0 270 > th dose independent rect. 18 9
280 70.36 radiation 1.0 43200 < th dose dependent rect. 3 1
282 70.39 atmosphere 1005.0 30 > th dose dependent rect. 18 5
284 70.40 humidity 50.0 720 > th dose independent rect. 19 16
285 70.41 wind 3.0 90 < th dose independent rect. 2 1
289 70.43 temperature 30.0 720 < th dose independent rect. 15 8
293 70.44 wind 9.0 720 < th dose independent rect. 23 16
295 70.47 atmosphere 995.0 720 > th dose independent rect. 11 8
296 70.47 atmosphere 1000.0 720 > th dose independent rect. 23 8
297 70.47 wind 5.0 90 < th dose dependent rect. 2 1
298 70.47 temperature 25.0 270 > th dose dependent rect. 19 8
303 70.50 temperature 30.0 720 < th dose independent rect. 3 8
308 70.51 atmosphere 995.0 720 > th dose independent rect. 7 16
311 70.52 atmosphere 1005.0 90 > th dose independent rect. 2 1
312 70.53 atmosphere 1000.0 90 > th dose independent rect. 3 23
313 70.53 temperature 20.0 30 > th dose dependent rect. 2 1
314 70.54 temperature 20.0 30 > th dose independent rect. 2 1
317 70.55 temperature 10.0 720 > th dose independent rect. 11 8
318 70.55 atmosphere 1015.0 720 < th dose independent rect. 11 8
319 70.55 radiation 30.0 720 < th dose independent rect. 23 8
320 70.55 temperature 10.0 720 > th dose independent rect. 19 16
321 70.55 atmosphere 995.0 720 > th dose independent rect. 19 16
323 70.56 temperature 10.0 720 > th dose independent rect. 23 8
324 70.56 temperature 30.0 720 < th dose independent rect. 23 8
325 70.56 humidity 50.0 720 > th dose independent rect. 23 8
329 70.56 precipitation 0.1 720 < th dose independent rect. 11 8
331 70.56 temperature 10.0 720 > th dose independent rect. 7 16
332 70.56 precipitation 0.1 720 < th dose independent rect. 7 16
338 70.56 precipitation 0.1 720 < th dose dependent rect. 11 8
339 70.56 precipitation 0.1 720 < th dose dependent rect. 7 16
341 70.57 wind 9.0 720 < th dose independent rect. 23 8
358 70.60 temperature 10.0 30 > th dose independent rect. 2 1
360 70.60 temperature 30.0 30 < th dose independent rect. 2 1
361 70.60 humidity 50.0 30 > th dose independent rect. 2 1
365 70.60 atmosphere 1010.0 30 < th dose independent rect. 2 1
367 70.60 radiation 1.0 30 < th dose independent rect. 2 1
372 70.60 precipitation 0.1 30 < th dose independent rect. 2 1
373 70.60 temperature 25.0 720 > th dose independent rect. 3 5
375 70.60 temperature 10.0 30 > th dose independent rect. 3 23
377 70.60 humidity 50.0 30 > th dose dependent rect. 2 1
380 70.60 radiation 1.0 30 < th dose dependent rect. 2 1
386 70.60 precipitation 0.1 30 < th dose dependent rect. 2 1
389 70.61 precipitation 0.1 720 < th dose independent rect. 23 8
396 70.61 precipitation 0.1 720 < th dose dependent rect. 23 8
398 70.62 wind 9.0 1440 < th dose independent rect. 3 1
399 70.62 temperature 10.0 1440 > th dose independent rect. 3 1
403 70.62 temperature 30.0 1440 < th dose independent rect. 3 1
407 70.62 humidity 50.0 1440 > th dose independent rect. 3 1
416 70.62 atmosphere 995.0 1440 > th dose independent rect. 3 1
417 70.62 radiation 1.0 1440 < th dose independent rect. 3 1
438 70.62 temperature 10.0 1440 > th dose independent rect. 4 23
465 70.65 wind 1.0 30 > th dose independent rect. 2 1
470 70.67 atmosphere 1015.0 30 < th dose dependent rect. 2 1
475 70.69 wind 3.0 30 < th dose independent rect. 20 3
477 70.69 temperature 30.0 30 < th dose dependent rect. 2 1
480 70.69 radiation 40.0 30 < th dose dependent rect. 23 12
491 70.72 atmosphere 995.0 30 > th dose dependent rect. 23 23
500 70.74 atmosphere 1000.0 90 > th dose independent rect. 23 12
519 70.75 wind 9.0 720 < th dose independent rect. 11 16
520 70.75 wind 9.0 720 < th dose independent rect. 19 16
549 70.79 precipitation 0.1 90 < th dose independent rect. 3 23
552 70.79 precipitation 0.1 90 < th dose dependent rect. 3 23
553 70.80 humidity 50.0 720 > th dose independent rect. 23 16
569 70.84 humidity 90.0 90 < th dose independent rect. 2 1
623 70.90 radiation 10.0 30 < th dose independent rect. 23 23
625 70.90 temperature 25.0 720 > th dose dependent rect. 3 5
626 70.91 radiation 10.0 30 < th dose independent rect. 23 11
629 70.92 wind 1.0 30 > th dose independent rect. 23 8
630 70.92 radiation 30.0 30 < th dose independent rect. 23 12
635 70.93 radiation 10.0 30 < th dose independent rect. 23 9
642 70.94 wind 1.0 720 > th dose independent rect. 11 8
643 70.94 temperature 25.0 720 < th dose independent rect. 1 8
660 70.97 temperature 30.0 90 < th dose independent rect. 11 12
664 70.98 temperature 25.0 720 > th dose independent rect. 24 10
679 71.00 wind 9.0 30 < th dose independent rect. 3 23
688 71.01 temperature 30.0 90 < th dose independent rect. 23 12
694 71.02 precipitation 0.1 720 < th dose independent rect. 19 16
696 71.02 temperature 25.0 270 > th dose dependent rect. 19 1
699 71.02 temperature 25.0 720 > th dose dependent rect. 23 10
700 71.02 precipitation 0.1 720 < th dose dependent rect. 19 16
710 71.04 humidity 50.0 720 > th dose independent rect. 15 8
712 71.04 temperature 25.0 30 > th dose independent rect. 24 11
713 71.04 temperature 10.0 720 > th dose dependent rect. 23 1
727 71.06 temperature 25.0 720 > th dose independent rect. 6 1
739 71.07 wind 1.0 90 > th dose independent rect. 23 12
749 71.08 humidity 50.0 90 > th dose independent rect. 23 12
757 71.09 atmosphere 1015.0 90 < th dose independent rect. 11 12
772 71.11 wind 9.0 90 < th dose independent rect. 23 12
773 71.11 temperature 10.0 90 > th dose independent rect. 11 12
774 71.11 temperature 10.0 90 > th dose independent rect. 23 12
775 71.11 atmosphere 995.0 90 > th dose independent rect. 11 12
782 71.12 precipitation 0.1 90 < th dose independent rect. 11 12
783 71.12 precipitation 0.1 90 < th dose independent rect. 23 12
790 71.12 precipitation 0.1 90 < th dose dependent rect. 11 12
791 71.12 precipitation 0.1 90 < th dose dependent rect. 23 12
803 71.14 precipitation 0.1 90 < th dose independent rect. 1 22
807 71.14 radiation 1.0 90 < th dose dependent rect. 1 22
808 71.14 precipitation 0.1 90 < th dose dependent rect. 1 22
814 71.16 radiation 40.0 30 < th dose independent rect. 23 23
818 71.17 humidity 80.0 4320 < th dose independent rect. 3 8
828 71.18 humidity 80.0 4320 > th dose independent rect. 3 8
836 71.18 temperature 10.0 90 > th dose dependent rect. 23 12
838 71.19 humidity 60.0 720 > th dose independent rect. 11 1
839 71.19 humidity 70.0 4320 < th dose independent rect. 10 1
847 71.19 temperature 10.0 30 > th dose dependent rect. 23 8
852 71.20 wind 9.0 90 < th dose independent rect. 11 12
861 71.20 radiation 10.0 30 < th dose dependent rect. 23 23
869 71.21 radiation 40.0 30 < th dose independent rect. 14 12
885 71.22 humidity 70.0 14400 < th dose independent rect. 7 3
897 71.22 wind 1.0 90 > th dose independent rect. 11 12
902 71.22 atmosphere 995.0 720 > th dose dependent rect. 23 1
904 71.22 humidity 80.0 14400 < th dose dependent rect. 7 2
906 71.23 humidity 70.0 4320 > th dose independent rect. 10 1
908 71.23 humidity 70.0 14400 > th dose independent rect. 7 3
924 71.23 radiation 1.0 90 < th dose independent rect. 1 22
926 71.23 humidity 70.0 4320 < th dose dependent rect. 12 1
935 71.24 temperature 25.0 10 > th dose independent rect. 22 6
942 71.24 temperature 25.0 10 < th dose independent rect. 2 12
944 71.24 temperature 25.0 10 > th dose independent rect. 24 21
945 71.24 humidity 50.0 30 > th dose independent rect. 3 23
946 71.24 wind 1.0 14400 < th dose dependent rect. 6 1
956 71.25 humidity 60.0 10 > th dose independent rect. 14 12
957 71.25 atmosphere 1000.0 10 > th dose independent rect. 14 12
959 71.25 atmosphere 1015.0 90 < th dose independent rect. 1 22
994 71.27 humidity 90.0 30 < th dose independent rect. 7 16